Transcript: Mouse XM_006526827.3

PREDICTED: Mus musculus STE20-like kinase (Slk), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Slk (20874)
Length:
5441
CDS:
252..3725

Additional Resources:

NCBI RefSeq record:
XM_006526827.3
NBCI Gene record:
Slk (20874)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006526827.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000361479 TGCTATAGAATTGGGATAATT pLKO_005 4123 3UTR 100% 15.000 21.000 N Slk n/a
2 TRCN0000025271 CGCTACAATCAACGACTTATT pLKO.1 3168 CDS 100% 13.200 18.480 N Slk n/a
3 TRCN0000025272 GCACAGAAAGTGCCCGTTAAA pLKO.1 2070 CDS 100% 13.200 18.480 N Slk n/a
4 TRCN0000025270 CCTGTCTTAATACCCAGTATT pLKO.1 2136 CDS 100% 13.200 10.560 N Slk n/a
5 TRCN0000361548 TATGGTTGAGATTGACATATT pLKO_005 251 5UTR 100% 13.200 10.560 N Slk n/a
6 TRCN0000025273 GCAGACATTAGAGGCATTGAA pLKO.1 434 CDS 100% 5.625 3.938 N Slk n/a
7 TRCN0000025269 GCCCAGAATAAAGAGACCAAT pLKO.1 174 5UTR 100% 4.950 3.465 N Slk n/a
8 TRCN0000361480 ACGAAGCCAAGCGCATCAAAG pLKO_005 2722 CDS 100% 10.800 6.480 N Slk n/a
9 TRCN0000092942 GAAGATGAGGAGGAGGAAGAA pLKO.1 984 CDS 100% 4.950 2.475 Y Gm13232 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006526827.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.