Transcript: Mouse XM_006527591.3

PREDICTED: Mus musculus ubiquitin specific peptidase 9, X chromosome (Usp9x), transcript variant X7, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Usp9x (22284)
Length:
9186
CDS:
525..8237

Additional Resources:

NCBI RefSeq record:
XM_006527591.3
NBCI Gene record:
Usp9x (22284)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006527591.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000238352 GATAATTGCAGCCCTTATTAA pLKO_005 1274 CDS 100% 15.000 21.000 N Usp9x n/a
2 TRCN0000238354 TCGTAATGTATGCCAATTTAG pLKO_005 7069 CDS 100% 13.200 18.480 N Usp9x n/a
3 TRCN0000030759 CGGCTTAACTTTCTTAGGTTT pLKO.1 2493 CDS 100% 4.950 3.960 N Usp9x n/a
4 TRCN0000238350 ATGCACTGAATGAGGTTAATA pLKO_005 1582 CDS 100% 15.000 10.500 N Usp9x n/a
5 TRCN0000238351 TTCTGTGTCTGGCTAATATTT pLKO_005 8298 3UTR 100% 15.000 10.500 N Usp9x n/a
6 TRCN0000238353 CCGCCAGATAGTACGACAATA pLKO_005 3666 CDS 100% 13.200 9.240 N Usp9x n/a
7 TRCN0000030761 GCAGAAGAAATCACTATGATT pLKO.1 6633 CDS 100% 5.625 3.938 N Usp9x n/a
8 TRCN0000030763 CCTCAACAAGTTTGGCACTTT pLKO.1 1196 CDS 100% 4.950 3.465 N Usp9x n/a
9 TRCN0000030760 GCCCAAATGAAGAAGTGACAA pLKO.1 4300 CDS 100% 4.950 3.465 N Usp9x n/a
10 TRCN0000030762 GCCGAGCTATTGATCTCCTTA pLKO.1 2884 CDS 100% 4.950 3.465 N Usp9x n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006527591.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.