Transcript: Mouse XM_006529512.3

PREDICTED: Mus musculus zinc finger, CCHC domain containing 2 (Zcchc2), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Zcchc2 (227449)
Length:
5806
CDS:
380..3895

Additional Resources:

NCBI RefSeq record:
XM_006529512.3
NBCI Gene record:
Zcchc2 (227449)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006529512.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000265344 CCCTAATGCGGTGGCTATTTC pLKO_005 2626 CDS 100% 13.200 18.480 N Zcchc2 n/a
2 TRCN0000251523 TAAATCGCTTCCAGGTAATTT pLKO_005 5030 3UTR 100% 15.000 10.500 N Zcchc2 n/a
3 TRCN0000240883 TGTACTTTATGGAGCTTATTT pLKO_005 5599 3UTR 100% 15.000 10.500 N ZCCHC2 n/a
4 TRCN0000251522 CTCTGCCTGTGGTGACTATAT pLKO_005 1303 CDS 100% 13.200 9.240 N Zcchc2 n/a
5 TRCN0000251520 TCCAGCTAAATAGTTACTATT pLKO_005 3438 CDS 100% 13.200 9.240 N Zcchc2 n/a
6 TRCN0000073041 CCTTCTAATGATACGTTGGAT pLKO.1 3863 CDS 100% 3.000 2.100 N ZCCHC2 n/a
7 TRCN0000251521 CCCAAGTGGTAGGACTAAATC pLKO_005 2985 CDS 100% 13.200 7.920 N Zcchc2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006529512.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.