Transcript: Mouse XM_006529793.2

PREDICTED: Mus musculus autophagy related 4B, cysteine peptidase (Atg4b), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Atg4b (66615)
Length:
3142
CDS:
508..1467

Additional Resources:

NCBI RefSeq record:
XM_006529793.2
NBCI Gene record:
Atg4b (66615)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006529793.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000030942 GACGAAATCTTGTCTGATGTT pLKO.1 403 5UTR 100% 4.950 6.930 N Atg4b n/a
2 TRCN0000308621 GACGAAATCTTGTCTGATGTT pLKO_005 403 5UTR 100% 4.950 6.930 N Atg4b n/a
3 TRCN0000030939 GCCCACTACTTTATTGGCTAT pLKO.1 1072 CDS 100% 4.050 5.670 N Atg4b n/a
4 TRCN0000073799 CGGTGTGGACAGATGATCTTT pLKO.1 514 CDS 100% 5.625 4.500 N ATG4B n/a
5 TRCN0000365107 GGTGTGGACAGATGATCTTTG pLKO_005 515 CDS 100% 10.800 7.560 N ATG4B n/a
6 TRCN0000030940 CCATCCATCAGATAGCGCAAA pLKO.1 656 CDS 100% 4.050 2.835 N Atg4b n/a
7 TRCN0000315570 CCATCCATCAGATAGCGCAAA pLKO_005 656 CDS 100% 4.050 2.835 N Atg4b n/a
8 TRCN0000030941 CCTTGGCTGTTCACATAGCAA pLKO.1 773 CDS 100% 3.000 2.100 N Atg4b n/a
9 TRCN0000308622 CCTTGGCTGTTCACATAGCAA pLKO_005 773 CDS 100% 3.000 2.100 N Atg4b n/a
10 TRCN0000030943 CCCATGTTTGAGCTGGTGGAA pLKO.1 1324 CDS 100% 2.640 1.848 N Atg4b n/a
11 TRCN0000308684 CCCATGTTTGAGCTGGTGGAA pLKO_005 1324 CDS 100% 2.640 1.848 N Atg4b n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006529793.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.