Transcript: Mouse XM_006531670.2

PREDICTED: Mus musculus latent transforming growth factor beta binding protein 3 (Ltbp3), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ltbp3 (16998)
Length:
4957
CDS:
667..4518

Additional Resources:

NCBI RefSeq record:
XM_006531670.2
NBCI Gene record:
Ltbp3 (16998)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006531670.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000065737 GACAGCGTATTGGCTACCAAT pLKO.1 3394 CDS 100% 4.950 6.930 N Ltbp3 n/a
2 TRCN0000301492 GACAGCGTATTGGCTACCAAT pLKO_005 3394 CDS 100% 4.950 6.930 N Ltbp3 n/a
3 TRCN0000304285 GATCGATCATCGAGGGTATTT pLKO_005 4546 3UTR 100% 13.200 10.560 N Ltbp3 n/a
4 TRCN0000379124 GTCTACAGCTCAGCCGAATTT pLKO_005 3487 CDS 100% 13.200 10.560 N Ltbp3 n/a
5 TRCN0000065736 CCGCTACTGTGTTGATGTGAA pLKO.1 2439 CDS 100% 4.950 3.465 N Ltbp3 n/a
6 TRCN0000301493 CCGCTACTGTGTTGATGTGAA pLKO_005 2439 CDS 100% 4.950 3.465 N Ltbp3 n/a
7 TRCN0000065734 CCTGTCGTGATGTCAACGAAT pLKO.1 2828 CDS 100% 4.950 3.465 N Ltbp3 n/a
8 TRCN0000301561 CCTGTCGTGATGTCAACGAAT pLKO_005 2828 CDS 100% 4.950 3.465 N Ltbp3 n/a
9 TRCN0000065733 CCTTTAATTTACTCTTGGCTT pLKO.1 4755 3UTR 100% 2.640 1.848 N Ltbp3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006531670.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.