Transcript: Mouse XM_006532107.2

PREDICTED: Mus musculus chaperonin containing Tcp1, subunit 6b (zeta) (Cct6b), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cct6b (12467)
Length:
2282
CDS:
783..2180

Additional Resources:

NCBI RefSeq record:
XM_006532107.2
NBCI Gene record:
Cct6b (12467)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006532107.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000439972 TGAACTGGCCGACATACTAAC pLKO_005 1070 CDS 100% 10.800 15.120 N Cct6b n/a
2 TRCN0000445885 TTCACTCTTGCACGGTGATTG pLKO_005 2098 CDS 100% 10.800 15.120 N Cct6b n/a
3 TRCN0000120463 CCAAATAAGCATACTCTCATA pLKO.1 1719 CDS 100% 4.950 6.930 N Cct6b n/a
4 TRCN0000437299 GCCTGCACCCTAGAATCATAA pLKO_005 922 CDS 100% 13.200 10.560 N Cct6b n/a
5 TRCN0000434440 AGCAGGAATCTGGGATAATTA pLKO_005 2057 CDS 100% 15.000 10.500 N Cct6b n/a
6 TRCN0000120464 GATCTCTTCATGGTGGAAATT pLKO.1 1143 CDS 100% 13.200 9.240 N Cct6b n/a
7 TRCN0000434213 GATCATTGGAGAGTTGCTAAA pLKO_005 875 CDS 100% 10.800 7.560 N Cct6b n/a
8 TRCN0000120465 AGACGAAAGCACTTGAAGTTT pLKO.1 964 CDS 100% 5.625 3.938 N Cct6b n/a
9 TRCN0000120462 CGATAGCAGAAGCTCTTGTTA pLKO.1 1834 CDS 100% 5.625 3.938 N Cct6b n/a
10 TRCN0000120466 CTCACCAAAGACGGCAATGTA pLKO.1 750 5UTR 100% 5.625 3.938 N Cct6b n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006532107.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.