Transcript: Mouse XM_006532901.2

PREDICTED: Mus musculus neuroligin 2 (Nlgn2), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Nlgn2 (216856)
Length:
5844
CDS:
1254..3764

Additional Resources:

NCBI RefSeq record:
XM_006532901.2
NBCI Gene record:
Nlgn2 (216856)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006532901.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000328640 CGCAGTAGTCATGACCTATTG pLKO_005 2846 CDS 100% 10.800 8.640 N Nlgn2 n/a
2 TRCN0000328639 CTGAACGCATCACTATCTTTG pLKO_005 2020 CDS 100% 10.800 8.640 N Nlgn2 n/a
3 TRCN0000196058 GCGCAGTAGTCATGACCTATT pLKO.1 2845 CDS 100% 10.800 8.640 N Nlgn2 n/a
4 TRCN0000075281 CCTCAACTACGACATGCTCAT pLKO.1 2372 CDS 100% 4.050 3.240 N NLGN2 n/a
5 TRCN0000184441 GCAGTATCTGCACATAGGCTT pLKO.1 2987 CDS 100% 2.640 2.112 N Nlgn2 n/a
6 TRCN0000328638 GCAGTATCTGCACATAGGCTT pLKO_005 2987 CDS 100% 2.640 2.112 N Nlgn2 n/a
7 TRCN0000328714 TTTGCCTCCTCCAAGAATTTC pLKO_005 4215 3UTR 100% 13.200 9.240 N Nlgn2 n/a
8 TRCN0000180497 GCAAGTTCAACAGCAAGGAAA pLKO.1 2965 CDS 100% 4.950 3.465 N Nlgn2 n/a
9 TRCN0000328637 GCAAGTTCAACAGCAAGGAAA pLKO_005 2965 CDS 100% 4.950 3.465 N Nlgn2 n/a
10 TRCN0000184124 CTGATATTGACCTAGGCCCAA pLKO.1 3214 CDS 100% 2.160 1.512 N Nlgn2 n/a
11 TRCN0000184175 GCCCATGTGAAGACATGCTTT pLKO.1 4042 3UTR 100% 0.495 0.347 N Nlgn2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006532901.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.