Transcript: Mouse XM_006533329.2

PREDICTED: Mus musculus rhomboid, veinlet-like 3 (Drosophila) (Rhbdl3), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Rhbdl3 (246104)
Length:
4155
CDS:
660..1871

Additional Resources:

NCBI RefSeq record:
XM_006533329.2
NBCI Gene record:
Rhbdl3 (246104)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006533329.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000032638 CCTAGCCAACATTGTCATGAA pLKO.1 1523 CDS 100% 4.950 6.930 N Rhbdl3 n/a
2 TRCN0000032637 CGGCTACATCAGCACAGGAAA pLKO.1 812 CDS 100% 4.950 3.960 N Rhbdl3 n/a
3 TRCN0000032635 GCCCTGGTTCATGATCACAAT pLKO.1 1145 CDS 100% 4.950 3.960 N Rhbdl3 n/a
4 TRCN0000032634 GCGCTATGTGACGTACATCTT pLKO.1 1295 CDS 100% 4.950 3.960 N Rhbdl3 n/a
5 TRCN0000048626 AGGCATGAAGTGCCAGTTCAA pLKO.1 1550 CDS 100% 4.950 3.465 N RHBDL3 n/a
6 TRCN0000048627 CACTGGAAAGTCCTGTTTGAT pLKO.1 771 CDS 100% 5.625 3.938 N RHBDL3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006533329.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.