Transcript: Mouse XM_006534506.3

PREDICTED: Mus musculus helicase with zinc finger domain (Helz), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Helz (78455)
Length:
6378
CDS:
166..6063

Additional Resources:

NCBI RefSeq record:
XM_006534506.3
NBCI Gene record:
Helz (78455)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006534506.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000120954 GCCTACAATATGAACCTATTA pLKO.1 3868 CDS 100% 13.200 18.480 N Helz n/a
2 TRCN0000162269 CCTGAGAAAGTGCTTAGTGAA pLKO.1 910 CDS 100% 4.950 6.930 N HELZ n/a
3 TRCN0000120955 CGAGGACTTAGATTATGGTTT pLKO.1 3228 CDS 100% 4.950 6.930 N Helz n/a
4 TRCN0000346600 TGCAGCCCTCCATTACGTTCA pLKO_005 6139 3UTR 100% 4.050 5.670 N Helz n/a
5 TRCN0000120952 CGTACTTATTGGCAATCCTAT pLKO.1 3624 CDS 100% 4.950 3.960 N Helz n/a
6 TRCN0000346598 CGTACTTATTGGCAATCCTAT pLKO_005 3624 CDS 100% 4.950 3.960 N Helz n/a
7 TRCN0000346525 CCTCTACATAAAGGATTATTT pLKO_005 2280 CDS 100% 15.000 10.500 N Helz n/a
8 TRCN0000346599 GCACAAGCAGACGCCAATTAA pLKO_005 3177 CDS 100% 15.000 10.500 N Helz n/a
9 TRCN0000120956 GACCTCTACATAAAGGATTAT pLKO.1 2278 CDS 100% 13.200 9.240 N Helz n/a
10 TRCN0000120953 CTGCTTTATATTGAGGAGATA pLKO.1 1552 CDS 100% 4.950 3.465 N Helz n/a
11 TRCN0000346524 TCTATCCACTCACGTTCTTTA pLKO_005 2858 CDS 100% 13.200 7.920 N Helz n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006534506.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.