Transcript: Mouse XM_006535287.3

PREDICTED: Mus musculus ankyrin repeat domain 17 (Ankrd17), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ankrd17 (81702)
Length:
9629
CDS:
526..8334

Additional Resources:

NCBI RefSeq record:
XM_006535287.3
NBCI Gene record:
Ankrd17 (81702)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006535287.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000304613 AGACCCTACTCACCGTTTAAA pLKO_005 2577 CDS 100% 15.000 21.000 N Ankrd17 n/a
2 TRCN0000072056 CCATCTGTTATTGGGAGTAAT pLKO.1 7849 CDS 100% 13.200 18.480 N Ankrd17 n/a
3 TRCN0000302186 CCATCTGTTATTGGGAGTAAT pLKO_005 7849 CDS 100% 13.200 18.480 N Ankrd17 n/a
4 TRCN0000072053 GCCCTTACATTAGCTTGTTAT pLKO.1 1723 CDS 100% 13.200 18.480 N Ankrd17 n/a
5 TRCN0000016951 GCTAGTATTGAGGACCATAAT pLKO.1 1585 CDS 100% 13.200 18.480 N ANKRD17 n/a
6 TRCN0000285198 TCTGAGCAAACACGGAAATTT pLKO_005 8648 3UTR 100% 15.000 12.000 N ANKRD17 n/a
7 TRCN0000304678 TCTGAGCAAACACGGAAATTT pLKO_005 8648 3UTR 100% 15.000 12.000 N Ankrd17 n/a
8 TRCN0000304666 GAATCGAACCACAGCTAATAA pLKO_005 2481 CDS 100% 15.000 10.500 N Ankrd17 n/a
9 TRCN0000072055 CCTCTCCAAATGGGAAGTTAA pLKO.1 5606 CDS 100% 13.200 9.240 N Ankrd17 n/a
10 TRCN0000072054 GCCGCAGATAAAGGGCATTAT pLKO.1 4489 CDS 100% 13.200 9.240 N Ankrd17 n/a
11 TRCN0000302187 GCCGCAGATAAAGGGCATTAT pLKO_005 4489 CDS 100% 13.200 9.240 N Ankrd17 n/a
12 TRCN0000285199 GGTCAATGATGAAGGTTATAC pLKO_005 1998 CDS 100% 13.200 9.240 N ANKRD17 n/a
13 TRCN0000072057 CCAGTAGTAGAACCTGCAAAT pLKO.1 6757 CDS 100% 10.800 7.560 N Ankrd17 n/a
14 TRCN0000016952 GCAGCAGATAACCGCAAGATA pLKO.1 4651 CDS 100% 5.625 3.938 N ANKRD17 n/a
15 TRCN0000274424 GCAGCAGATAACCGCAAGATA pLKO_005 4651 CDS 100% 5.625 3.938 N ANKRD17 n/a
16 TRCN0000016950 GCTGCTAACTTTAACAGACAA pLKO.1 7612 CDS 100% 4.950 3.960 N ANKRD17 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006535287.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.