Transcript: Mouse XM_006538105.3

PREDICTED: Mus musculus astrotactin 2 (Astn2), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Astn2 (56079)
Length:
4393
CDS:
172..3036

Additional Resources:

NCBI RefSeq record:
XM_006538105.3
NBCI Gene record:
Astn2 (56079)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006538105.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000216798 GGATATCTCCGATTGGCTAAA pLKO.1 1668 CDS 100% 10.800 15.120 N Astn2 n/a
2 TRCN0000248688 GGATATCTCCGATTGGCTAAA pLKO_005 1668 CDS 100% 10.800 15.120 N Astn2 n/a
3 TRCN0000248689 CAACCGGACACAACATGTAAA pLKO_005 2556 CDS 100% 13.200 9.240 N Astn2 n/a
4 TRCN0000179047 CCTGAACACTTCATTGCAGAT pLKO.1 1612 CDS 100% 4.050 2.835 N Astn2 n/a
5 TRCN0000196161 GCAGCGGACATTTCTTTGGTT pLKO.1 664 CDS 100% 3.000 2.100 N Astn2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006538105.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.