Transcript: Mouse XM_006538216.3

PREDICTED: Mus musculus zinc finger, DHHC domain containing 21 (Zdhhc21), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Zdhhc21 (68268)
Length:
8958
CDS:
570..1367

Additional Resources:

NCBI RefSeq record:
XM_006538216.3
NBCI Gene record:
Zdhhc21 (68268)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006538216.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000121379 GCTTACTTGCTACGCACTGAT pLKO.1 1001 CDS 100% 4.950 6.930 N Zdhhc21 n/a
2 TRCN0000121380 ACTCTTCTATACACAACTGAT pLKO.1 1157 CDS 100% 4.950 3.960 N Zdhhc21 n/a
3 TRCN0000121381 CATCACTATGTTAGTTGGAAT pLKO.1 1130 CDS 100% 4.950 3.960 N Zdhhc21 n/a
4 TRCN0000121377 CCCTTCTTTCTCCTTCTCAAA pLKO.1 1905 3UTR 100% 4.950 3.465 N Zdhhc21 n/a
5 TRCN0000144573 GCATCATCACAGATACAACAT pLKO.1 1180 CDS 100% 4.950 3.465 N ZDHHC21 n/a
6 TRCN0000121378 CCTCCTTAACTGATCCTGGAA pLKO.1 769 CDS 100% 2.640 1.848 N Zdhhc21 n/a
7 TRCN0000144923 GTTGGAATAACTGGACTCTTT pLKO.1 1143 CDS 100% 4.950 3.465 N ZDHHC21 n/a
8 TRCN0000297428 GTTGGAATAACTGGACTCTTT pLKO_005 1143 CDS 100% 4.950 3.465 N ZDHHC21 n/a
9 TRCN0000166364 CACACACACACACACACACAA pLKO.1 7526 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006538216.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10027 pDONR223 100% 91.9% 97.7% None (many diffs) n/a
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