Construct: ORF ccsbBroadEn_10027
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010187.1_s300c1, BRDN0000386885
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZDHHC21 (340481)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | NM_001354118.2 | 99.8% | 100% | 318T>C |
| 2 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | NM_001354119.2 | 99.8% | 100% | 318T>C |
| 3 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | NM_001354120.2 | 99.8% | 100% | 318T>C |
| 4 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | NM_001354121.2 | 99.8% | 100% | 318T>C |
| 5 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | NM_001354122.2 | 99.8% | 100% | 318T>C |
| 6 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | NM_001354123.2 | 99.8% | 100% | 318T>C |
| 7 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | NM_001354124.2 | 99.8% | 100% | 318T>C |
| 8 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | NM_178566.6 | 99.8% | 100% | 318T>C |
| 9 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | XM_017014682.1 | 99.8% | 100% | 318T>C |
| 10 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | XM_017014683.1 | 99.8% | 100% | 318T>C |
| 11 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | XM_024447531.1 | 99.8% | 100% | 318T>C |
| 12 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | NM_001354125.2 | 88.9% | 89% | 36_37ins87;231T>C |
| 13 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | NM_001354126.2 | 88.9% | 89% | 36_37ins87;231T>C |
| 14 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | XM_017014691.1 | 88.9% | 89% | 36_37ins87;231T>C |
| 15 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | XM_024447532.1 | 81.9% | 79.6% | (many diffs) |
| 16 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | NM_001354127.2 | 63.2% | 63.3% | 0_1ins291;27T>C |
| 17 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | NM_001354128.2 | 63.2% | 63.3% | 0_1ins291;27T>C |
| 18 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | NM_001354129.2 | 63.2% | 63.3% | 0_1ins291;27T>C |
| 19 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | NM_001354130.2 | 63.2% | 63.3% | 0_1ins291;27T>C |
| 20 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | XR_002956779.1 | 23.9% | (many diffs) | |
| 21 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | NR_148716.2 | 8.5% | (many diffs) | |
| 22 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | NR_148715.2 | 8.5% | (many diffs) | |
| 23 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | NR_148718.2 | 8.5% | (many diffs) | |
| 24 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | XR_001746286.1 | 8.3% | 1_262del;580T>C;1058_9462del | |
| 25 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | NR_148717.2 | 8.3% | (many diffs) | |
| 26 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | NR_148714.2 | 8.2% | (many diffs) | |
| 27 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | XR_001746285.1 | 7.1% | 1_262del;580T>C;1058_11119del | |
| 28 | human | 340481 | ZDHHC21 | zinc finger DHHC-type conta... | XR_001746284.1 | 6.2% | 1_262del;580T>C;1058_12763del | |
| 29 | mouse | 68268 | Zdhhc21 | zinc finger, DHHC domain co... | NM_026647.3 | 91.9% | 97.7% | (many diffs) |
| 30 | mouse | 68268 | Zdhhc21 | zinc finger, DHHC domain co... | XM_006538216.3 | 91.9% | 97.7% | (many diffs) |
| 31 | mouse | 68268 | Zdhhc21 | zinc finger, DHHC domain co... | XM_011250093.2 | 91.9% | 97.7% | (many diffs) |
| 32 | mouse | 68268 | Zdhhc21 | zinc finger, DHHC domain co... | XM_011250094.2 | 91.9% | 97.7% | (many diffs) |
| 33 | mouse | 68268 | Zdhhc21 | zinc finger, DHHC domain co... | XM_017320372.1 | 91.9% | 97.7% | (many diffs) |
| 34 | mouse | 68268 | Zdhhc21 | zinc finger, DHHC domain co... | XM_017320373.1 | 91.9% | 97.7% | (many diffs) |
| 35 | mouse | 68268 | Zdhhc21 | zinc finger, DHHC domain co... | XM_011250097.2 | 45.2% | 45.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 861
- ORF length:
- 795
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG TCTCCGGATT CACTTTGTTG TTGACCCACA TGGTTGGTGC TGCATGGGTT 121 TGATTGTCTT TGTTTGGTTA TACAATATTG TTTTAATTCC CAAAATTGTC CTCTTTCCTC 181 ACTATGAAGA AGGACATATT CCAGGCATAT TAATAATAAT ATTCTATGGC ATTTCCATAT 241 TCTGTCTGGT TGCCTTAGTG AGGGCCTCCA TAACTGATCC AGGAAGACTC CCTGAGAACC 301 CCAAGATCCC ACATGGAGAA AGGGAGTTCT GGGAATTATG TAACAAGTGT AATTTGATGA 361 GACCAAAGCG TTCCCATCAC TGCAGCCGCT GCGGCCACTG TGTGAGGAGA ATGGATCATC 421 ACTGTCCATG GATTAACAAT TGTGTTGGTG AAGATAATCA TTGGCTCTTT CTGCAGTTGT 481 GTTTCTACAC TGAACTTCTT ACTTGCTACG CACTGATGTT TTCTTTCTGC CACTATTACT 541 ATTTTCTTCC ACTAAAAAAG CGTAATTTGG ACCTCTTTGT TTTTAGACAT GAATTGGCCA 601 TAATGAGACT AGCAGCCTTT ATGGGCATTA CTATGTTAGT TGGAATAACT GGACTCTTTT 661 ACACTCAACT AATTGGCATC ATCACAGATA CAACATCTAT TGAAAAGATG TCAAACTGTT 721 GTGAAGATAT ATCGAGGCCC CGAAAGCCAT GGCAGCAGAC CTTCTCAGAA GTTTTTGGCA 781 CTCGTTGGAA GATCCTGTGG TTCATTCCTT TCAGGCAGAG GCAACCACTG CGAGTTCCCT 841 ACCACTTTGC CAATCATGTC TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 901 attgcttatc aatttgttgc aacgaac