Transcript: Mouse XM_006538226.3

PREDICTED: Mus musculus ubiquitin-associated protein 2 (Ubap2), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ubap2 (68926)
Length:
4519
CDS:
301..3681

Additional Resources:

NCBI RefSeq record:
XM_006538226.3
NBCI Gene record:
Ubap2 (68926)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006538226.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000241149 ACGCTTACAGCACAGGTTATG pLKO_005 3206 CDS 100% 10.800 15.120 N Ubap2 n/a
2 TRCN0000241151 GATGGGAATCTAGCTAATAAT pLKO_005 2884 CDS 100% 15.000 10.500 N Ubap2 n/a
3 TRCN0000241148 GCCAGTCAGCTCCCTTATAAA pLKO_005 4353 3UTR 100% 15.000 10.500 N Ubap2 n/a
4 TRCN0000216377 GTGAACAAAGCTATCAATATA pLKO.1 544 CDS 100% 15.000 10.500 N Ubap2 n/a
5 TRCN0000241147 ATGTGAACAAAGCTATCAATA pLKO_005 542 CDS 100% 13.200 9.240 N Ubap2 n/a
6 TRCN0000350452 ATGTGAACAAAGCTATCAATA pLKO_005 542 CDS 100% 13.200 9.240 N UBAP2 n/a
7 TRCN0000216004 CAATGAAGAATCACGACTTAT pLKO.1 4046 3UTR 100% 13.200 9.240 N Ubap2 n/a
8 TRCN0000181098 CAGCTTCCTAACATGACTGTT pLKO.1 1747 CDS 100% 4.950 3.465 N Ubap2 n/a
9 TRCN0000241150 CACTTCTGCCAGCTCATATTC pLKO_005 1323 CDS 100% 13.200 7.920 N Ubap2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006538226.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.