Transcript: Mouse XM_006538799.4

PREDICTED: Mus musculus immunoglobulin superfamily, member 21 (Igsf21), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Mus musculus (mouse)
Gene:
Igsf21 (230868)
Length:
1581
CDS:
613..1428

Additional Resources:

NCBI RefSeq record:
XM_006538799.4
NBCI Gene record:
Igsf21 (230868)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006538799.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000232890 GCTACCTGACAGTCAACATTG pLKO_005 683 CDS 100% 10.800 15.120 N IGSF21 n/a
2 TRCN0000112600 CGGATTTCAGAATGAGGTCTT pLKO.1 1113 CDS 100% 4.050 5.670 N Igsf21 n/a
3 TRCN0000112602 GCACATGGAGAATTACCGCAA pLKO.1 864 CDS 100% 2.160 3.024 N Igsf21 n/a
4 TRCN0000232892 AGGTCCGGATCTCAGACAATG pLKO_005 926 CDS 100% 10.800 7.560 N IGSF21 n/a
5 TRCN0000112604 TCAGGCAACATCTTCCTCAAT pLKO.1 1009 CDS 100% 4.950 3.465 N Igsf21 n/a
6 TRCN0000180559 GATCTCAGACAATGGTCCCTA pLKO.1 933 CDS 100% 2.640 1.848 N IGSF21 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006538799.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.