Transcript: Mouse XM_006539251.2

PREDICTED: Mus musculus mindbomb E3 ubiquitin protein ligase 2 (Mib2), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Mib2 (76580)
Length:
3565
CDS:
540..3488

Additional Resources:

NCBI RefSeq record:
XM_006539251.2
NBCI Gene record:
Mib2 (76580)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006539251.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000366043 GACGGCTCAGAGGTGGTAAAT pLKO_005 3249 CDS 100% 13.200 10.560 N Mib2 n/a
2 TRCN0000374271 TCGGAGCTGGCATTGCTAATT pLKO_005 3126 CDS 100% 13.200 10.560 N Mib2 n/a
3 TRCN0000041148 GCTCTATGACAACGCCCAAAT pLKO.1 764 CDS 100% 10.800 8.640 N Mib2 n/a
4 TRCN0000374337 AGGGCACACGTACCAACTATC pLKO_005 712 CDS 100% 10.800 7.560 N Mib2 n/a
5 TRCN0000366045 CTCTATGACAACGCCCAAATC pLKO_005 765 CDS 100% 10.800 7.560 N Mib2 n/a
6 TRCN0000366044 TCGATGTCACTGCTACCAATA pLKO_005 2386 CDS 100% 10.800 7.560 N Mib2 n/a
7 TRCN0000041150 TCGAAGGATGAAGAAGTGTAT pLKO.1 3191 CDS 100% 4.950 3.465 N Mib2 n/a
8 TRCN0000374328 CTGATCGCAGACCTTCCTTCA pLKO_005 3509 3UTR 100% 4.050 2.835 N Mib2 n/a
9 TRCN0000041151 GTGGTGAAGGTGTTTGGAGAT pLKO.1 1638 CDS 100% 4.050 2.430 N Mib2 n/a
10 TRCN0000438514 GGACAAGGTCAAGTGTCTGCT pLKO_005 1319 CDS 100% 2.640 1.584 N MIB2 n/a
11 TRCN0000041149 GCGCTATGAGACATCTCACTT pLKO.1 932 CDS 100% 4.950 6.930 N Mib2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006539251.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.