Transcript: Mouse XM_006539469.2

PREDICTED: Mus musculus myeloid zinc finger 1 (Mzf1), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Mzf1 (109889)
Length:
3482
CDS:
1296..2885

Additional Resources:

NCBI RefSeq record:
XM_006539469.2
NBCI Gene record:
Mzf1 (109889)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006539469.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000321551 AGCTTGATGGACCTCGGAAAT pLKO_005 1909 CDS 100% 10.800 15.120 N Mzf1 n/a
2 TRCN0000321554 TCCGGTATGAGGATGCAATAG pLKO_005 1684 CDS 100% 10.800 15.120 N Mzf1 n/a
3 TRCN0000086370 CCTTGGTTGACAGACTTCGAT pLKO.1 1885 CDS 100% 3.000 2.400 N Mzf1 n/a
4 TRCN0000321553 GACGATGAGAGAGAAGATATA pLKO_005 1617 CDS 100% 13.200 9.240 N Mzf1 n/a
5 TRCN0000321552 GCTACGCCCAGAAGTACATTC pLKO_005 1751 CDS 100% 10.800 7.560 N Mzf1 n/a
6 TRCN0000086368 CCACTGAACCTACCAATGAAA pLKO.1 2067 CDS 100% 5.625 3.938 N Mzf1 n/a
7 TRCN0000086371 CTTCCGGTATGAGGATGCAAT pLKO.1 1682 CDS 100% 4.950 3.465 N Mzf1 n/a
8 TRCN0000086369 CCTTGTACTATTCCTTCCCTA pLKO.1 1471 CDS 100% 2.640 1.848 N Mzf1 n/a
9 TRCN0000086372 CGCGCCACCAAAGGACCCATA pLKO.1 3219 3UTR 100% 0.000 0.000 N Mzf1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006539469.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.