Transcript: Mouse XM_006539677.3

PREDICTED: Mus musculus URI1, prefoldin-like chaperone (Uri1), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Uri1 (19777)
Length:
3018
CDS:
38..1495

Additional Resources:

NCBI RefSeq record:
XM_006539677.3
NBCI Gene record:
Uri1 (19777)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006539677.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000095386 GCTGGGTGAACTTGAAAGTAA pLKO.1 562 CDS 100% 5.625 7.875 N Uri1 n/a
2 TRCN0000375861 TGTCATACTGTAATCTTTAAG pLKO_005 1953 3UTR 100% 13.200 10.560 N Uri1 n/a
3 TRCN0000348916 TGTTCTGCTGGCTTCGTTAAT pLKO_005 1644 3UTR 100% 13.200 10.560 N Uri1 n/a
4 TRCN0000095388 TCAAGTCAATAGTCTGAACTA pLKO.1 739 CDS 100% 4.950 3.960 N Uri1 n/a
5 TRCN0000095384 CCTGGTTTAGATTGTGTATAA pLKO.1 2093 3UTR 100% 13.200 9.240 N Uri1 n/a
6 TRCN0000375862 GATGTTGTGAATGGAGAATAT pLKO_005 1079 CDS 100% 13.200 9.240 N Uri1 n/a
7 TRCN0000348915 TCTCATACTGTTGAACCTAAA pLKO_005 905 CDS 100% 10.800 7.560 N Uri1 n/a
8 TRCN0000095385 CCATCAAGAGTCCTGCTGATA pLKO.1 1041 CDS 100% 4.950 3.465 N Uri1 n/a
9 TRCN0000352280 CCATCAAGAGTCCTGCTGATA pLKO_005 1041 CDS 100% 4.950 3.465 N Uri1 n/a
10 TRCN0000095387 CCATCAGAAGTATCAGAGGAA pLKO.1 1421 CDS 100% 2.640 1.848 N Uri1 n/a
11 TRCN0000348850 ATGCTATTTCAGCAGATAATT pLKO_005 864 CDS 100% 15.000 9.000 N Uri1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006539677.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.