Transcript: Mouse XM_006540538.3

PREDICTED: Mus musculus vaccinia related kinase 3 (Vrk3), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Vrk3 (101568)
Length:
2342
CDS:
676..2037

Additional Resources:

NCBI RefSeq record:
XM_006540538.3
NBCI Gene record:
Vrk3 (101568)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006540538.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000285613 CACCGCTCCCTTAGGACATAT pLKO_005 2147 3UTR 100% 13.200 18.480 N Vrk3 n/a
2 TRCN0000276640 TGGTGATGGCCCTCAATTATG pLKO_005 1913 CDS 100% 13.200 10.560 N Vrk3 n/a
3 TRCN0000023788 CAAGTACAGGTTCCTAGTATT pLKO.1 1368 CDS 100% 13.200 9.240 N Vrk3 n/a
4 TRCN0000023786 GCTCTGGAGTATCTCCATGAA pLKO.1 1489 CDS 100% 4.950 3.465 N Vrk3 n/a
5 TRCN0000276641 GCTCTGGAGTATCTCCATGAA pLKO_005 1489 CDS 100% 4.950 3.465 N Vrk3 n/a
6 TRCN0000023784 GCTGAGAATGTCTTTGTGAAT pLKO.1 1537 CDS 100% 4.950 3.465 N Vrk3 n/a
7 TRCN0000276638 GCTGAGAATGTCTTTGTGAAT pLKO_005 1537 CDS 100% 4.950 3.465 N Vrk3 n/a
8 TRCN0000023785 CTATGGCTTCACCTACCGATA pLKO.1 1590 CDS 100% 4.050 2.835 N Vrk3 n/a
9 TRCN0000276639 CTATGGCTTCACCTACCGATA pLKO_005 1590 CDS 100% 4.050 2.835 N Vrk3 n/a
10 TRCN0000023787 CTCTGAATCAAGGACCCAGAA pLKO.1 1182 CDS 100% 4.050 2.835 N Vrk3 n/a
11 TRCN0000197020 GAGTTCATTAGCATGGACCTG pLKO.1 1675 CDS 100% 2.160 1.512 N VRK3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006540538.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.