Transcript: Mouse XM_006540904.2

PREDICTED: Mus musculus Hermansky-Pudlak syndrome 5 (Hps5), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Hps5 (246694)
Length:
4505
CDS:
207..3587

Additional Resources:

NCBI RefSeq record:
XM_006540904.2
NBCI Gene record:
Hps5 (246694)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006540904.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000381619 GCATAGCTGTGTCTCGGAAAT pLKO_005 322 CDS 100% 10.800 15.120 N Hps5 n/a
2 TRCN0000382408 AGTCCCTTGTTGATTGCATTT pLKO_005 2730 CDS 100% 10.800 8.640 N Hps5 n/a
3 TRCN0000202429 GCTCAGTTCTTGGCCTATCTA pLKO.1 2859 CDS 100% 5.625 4.500 N Hps5 n/a
4 TRCN0000380649 TGTAGTTGTTTGGGAATTAAA pLKO_005 500 CDS 100% 15.000 10.500 N Hps5 n/a
5 TRCN0000189637 CGTGTCTCTTCAGGCTGTTAA pLKO.1 1814 CDS 100% 13.200 9.240 N Hps5 n/a
6 TRCN0000192959 GCCTCCTGAATGTTAGAATTA pLKO.1 4303 3UTR 100% 13.200 9.240 N Hps5 n/a
7 TRCN0000381324 CAGTCAGTCCGACGAAGATTC pLKO_005 1586 CDS 100% 10.800 7.560 N Hps5 n/a
8 TRCN0000190715 GCTTTGGTACAGGAAGACATA pLKO.1 3877 3UTR 100% 4.950 3.465 N Hps5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006540904.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.