Transcript: Mouse XM_006540964.3

PREDICTED: Mus musculus lemur tyrosine kinase 3 (Lmtk3), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Lmtk3 (381983)
Length:
7674
CDS:
157..4431

Additional Resources:

NCBI RefSeq record:
XM_006540964.3
NBCI Gene record:
Lmtk3 (381983)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006540964.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000023376 TCGCTGCCTGATGTCTATATT pLKO.1 442 CDS 100% 15.000 21.000 N Lmtk3 n/a
2 TRCN0000360986 CTGACTATTGGTATGACATTT pLKO_005 1298 CDS 100% 13.200 18.480 N Lmtk3 n/a
3 TRCN0000023374 CTTCCTGTTGATCATGGAGTT pLKO.1 771 CDS 100% 4.050 5.670 N Lmtk3 n/a
4 TRCN0000023365 GCAGAATCTTGTGTGGACGAT pLKO.1 4479 3UTR 100% 2.640 3.696 N LOC243968 n/a
5 TRCN0000361050 CGGTGAGCAGCGAGTACTATA pLKO_005 1754 CDS 100% 13.200 10.560 N Lmtk3 n/a
6 TRCN0000282433 TTTCGAGTGGGCGGAGGATTT pLKO_005 4284 CDS 100% 10.800 8.640 N LMTK3 n/a
7 TRCN0000023377 CTTACCTGTCTGTGTTGCAAA pLKO.1 325 CDS 100% 4.950 3.960 N Lmtk3 n/a
8 TRCN0000023378 CCTACGCTGTGGTCCTCATTT pLKO.1 269 CDS 100% 13.200 9.240 N Lmtk3 n/a
9 TRCN0000262810 GGAACAGCGAGCAGATCAAAG pLKO_005 3725 CDS 100% 10.800 7.560 N LMTK3 n/a
10 TRCN0000023367 GACTGTGCGTATTGGAGACTA pLKO.1 990 CDS 100% 4.950 3.465 N LOC243968 n/a
11 TRCN0000023366 GATGTTCGTTTCAAGGAGTTT pLKO.1 352 CDS 100% 4.950 3.465 N LOC243968 n/a
12 TRCN0000023364 CCTTTGTAGTTCAGGTGAGCA pLKO.1 2702 CDS 100% 2.640 1.848 N LOC243968 n/a
13 TRCN0000361051 CTTCGTGCTGGTAGATCAAAG pLKO_005 1119 CDS 100% 10.800 6.480 N Lmtk3 n/a
14 TRCN0000023375 CCTTCATCTTTCTCCTCCTTA pLKO.1 308 CDS 100% 4.950 2.970 N Lmtk3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006540964.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.