Transcript: Human XM_006711238.4

PREDICTED: Homo sapiens proline rich coiled-coil 2C (PRRC2C), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PRRC2C (23215)
Length:
10340
CDS:
289..8979

Additional Resources:

NCBI RefSeq record:
XM_006711238.4
NBCI Gene record:
PRRC2C (23215)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006711238.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000142283 GCCTGCAGTTAAGACTGTAAA pLKO.1 3636 CDS 100% 13.200 18.480 N PRRC2C n/a
2 TRCN0000343832 GCCTGCAGTTAAGACTGTAAA pLKO_005 3636 CDS 100% 13.200 18.480 N PRRC2C n/a
3 TRCN0000141587 CCCACAAATGGCACAGTTAAT pLKO.1 4654 CDS 100% 13.200 10.560 N PRRC2C n/a
4 TRCN0000139677 CCCAGTTTACGTCCACCAAAT pLKO.1 790 CDS 100% 10.800 8.640 N PRRC2C n/a
5 TRCN0000141560 CCTGGATGAATGAGCAGATAA pLKO.1 9576 3UTR 100% 13.200 9.240 N PRRC2C n/a
6 TRCN0000140632 GCCAGCCTTTCAGAGGATTAA pLKO.1 8186 CDS 100% 13.200 9.240 N PRRC2C n/a
7 TRCN0000343834 GCCAGCCTTTCAGAGGATTAA pLKO_005 8186 CDS 100% 13.200 9.240 N PRRC2C n/a
8 TRCN0000141677 CGGCTGTATTATCTGGCTATT pLKO.1 2258 CDS 100% 10.800 7.560 N PRRC2C n/a
9 TRCN0000139644 CCAGCAGGTTACAGTACCTTT pLKO.1 8025 CDS 100% 4.950 3.465 N PRRC2C n/a
10 TRCN0000343833 CCAGCAGGTTACAGTACCTTT pLKO_005 8025 CDS 100% 4.950 3.465 N PRRC2C n/a
11 TRCN0000143461 GCTGCTTATTCTGTAGAACAT pLKO.1 2821 CDS 100% 4.950 3.465 N PRRC2C n/a
12 TRCN0000141012 CGCAAGTTTATGTGTCTCAGT pLKO.1 7412 CDS 100% 2.640 1.848 N PRRC2C n/a
13 TRCN0000140164 GCAACAATGGTCCACCCAAAT pLKO.1 4955 CDS 100% 10.800 6.480 N PRRC2C n/a
14 TRCN0000343898 GCAACAATGGTCCACCCAAAT pLKO_005 4955 CDS 100% 10.800 6.480 N PRRC2C n/a
15 TRCN0000143109 GCATCCTTGAACCATATCAAA pLKO.1 9609 3UTR 100% 5.625 3.375 N PRRC2C n/a
16 TRCN0000343899 GCATCCTTGAACCATATCAAA pLKO_005 9609 3UTR 100% 5.625 3.375 N PRRC2C n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006711238.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.