Transcript: Human XM_006711903.3

PREDICTED: Homo sapiens integrin subunit beta 1 binding protein 1 (ITGB1BP1), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ITGB1BP1 (9270)
Length:
1244
CDS:
463..1065

Additional Resources:

NCBI RefSeq record:
XM_006711903.3
NBCI Gene record:
ITGB1BP1 (9270)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006711903.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000122920 GCAGTTCCCAAAGTAGCGAAA pLKO.1 497 CDS 100% 4.050 5.670 N ITGB1BP1 n/a
2 TRCN0000319015 GCAGTTCCCAAAGTAGCGAAA pLKO_005 497 CDS 100% 4.050 5.670 N ITGB1BP1 n/a
3 TRCN0000122921 CCTGTGCAGAATTTCGAATAA pLKO.1 638 CDS 100% 13.200 9.240 N ITGB1BP1 n/a
4 TRCN0000319016 CCTGTGCAGAATTTCGAATAA pLKO_005 638 CDS 100% 13.200 9.240 N ITGB1BP1 n/a
5 TRCN0000122922 GCAAGATGGAAAGTTGCCTTT pLKO.1 750 CDS 100% 4.050 2.835 N ITGB1BP1 n/a
6 TRCN0000319089 GCAAGATGGAAAGTTGCCTTT pLKO_005 750 CDS 100% 4.050 2.835 N ITGB1BP1 n/a
7 TRCN0000122923 TGAAGGGCCATTAGACCTGAT pLKO.1 708 CDS 100% 4.050 2.835 N ITGB1BP1 n/a
8 TRCN0000319088 TGAAGGGCCATTAGACCTGAT pLKO_005 708 CDS 100% 4.050 2.835 N ITGB1BP1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006711903.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.