Transcript: Human XM_006712856.2

PREDICTED: Homo sapiens SP140 nuclear body protein like (SP140L), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SP140L (93349)
Length:
2524
CDS:
78..1688

Additional Resources:

NCBI RefSeq record:
XM_006712856.2
NBCI Gene record:
SP140L (93349)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006712856.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000359271 GGTGTTTCACAAGTAGCAAAT pLKO_005 123 CDS 100% 10.800 15.120 N SP140L n/a
2 TRCN0000021959 GATCTCTACCTAATCCTCCAA pLKO.1 1084 CDS 100% 2.640 2.112 N SP140L n/a
3 TRCN0000359335 ACCTAATCCTCCAAGAATATA pLKO_005 1091 CDS 100% 15.000 10.500 N SP140L n/a
4 TRCN0000359269 CATAAGCTGGAGATATCAAAT pLKO_005 255 CDS 100% 13.200 9.240 N SP140L n/a
5 TRCN0000359341 TGACATCAAACTAAGTCTTAA pLKO_005 575 CDS 100% 13.200 9.240 N SP140L n/a
6 TRCN0000021962 CCTTGGCAAAGTGTATACAGA pLKO.1 940 CDS 100% 3.000 2.100 N SP140L n/a
7 TRCN0000021963 TGGAGGAAGGATCTCTACCTA pLKO.1 1075 CDS 100% 3.000 2.100 N SP140L n/a
8 TRCN0000021960 CGACACTTGTTCAAGAGTCTT pLKO.1 1226 CDS 100% 4.950 2.475 Y SP140L n/a
9 TRCN0000019225 GCAAATGAGATGAACCATCTT pLKO.1 138 CDS 100% 4.950 2.475 Y SP100 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006712856.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.