Transcript: Human XM_006714461.4

PREDICTED: Homo sapiens nicotinamide nucleotide transhydrogenase (NNT), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
NNT (23530)
Length:
4264
CDS:
241..3108

Additional Resources:

NCBI RefSeq record:
XM_006714461.4
NBCI Gene record:
NNT (23530)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006714461.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000221880 CGAGAAGCTAATAGCATTATT pLKO.1 2611 CDS 100% 15.000 21.000 N NNT n/a
2 TRCN0000278376 CGAGAAGCTAATAGCATTATT pLKO_005 2611 CDS 100% 15.000 21.000 N NNT n/a
3 TRCN0000221876 GCACCTTTGTTGGTGGATATT pLKO.1 1655 CDS 100% 13.200 18.480 N NNT n/a
4 TRCN0000297432 GCACCTTTGTTGGTGGATATT pLKO_005 1655 CDS 100% 13.200 18.480 N NNT n/a
5 TRCN0000221878 CGTCGTTATCACTGTGCTGAA pLKO.1 2343 CDS 100% 4.050 5.670 N NNT n/a
6 TRCN0000278312 CGTCGTTATCACTGTGCTGAA pLKO_005 2343 CDS 100% 4.050 5.670 N NNT n/a
7 TRCN0000221877 CCCTATGGTTAATCCAACATT pLKO.1 237 5UTR 100% 5.625 4.500 N NNT n/a
8 TRCN0000278313 CCCTATGGTTAATCCAACATT pLKO_005 237 5UTR 100% 5.625 4.500 N NNT n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006714461.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15765 pDONR223 0% 21.6% 21.6% None 1_2244del;2505A>G n/a
2 ccsbBroad304_15765 pLX_304 0% 21.6% 21.6% V5 1_2244del;2505A>G n/a
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