Transcript: Human XM_006715056.3

PREDICTED: Homo sapiens MAM domain containing glycosylphosphatidylinositol anchor 1 (MDGA1), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MDGA1 (266727)
Length:
3638
CDS:
124..3045

Additional Resources:

NCBI RefSeq record:
XM_006715056.3
NBCI Gene record:
MDGA1 (266727)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006715056.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000267476 GTGGGCCCTTCCAGATTATTT pLKO_005 2777 CDS 100% 15.000 10.500 N Mdga1 n/a
2 TRCN0000154541 GATCCATGAAGAACGCTACAT pLKO.1 1103 CDS 100% 4.950 3.465 N MDGA1 n/a
3 TRCN0000156921 GAACGAAACTCTGGTGGTGAA pLKO.1 861 CDS 100% 4.050 2.835 N MDGA1 n/a
4 TRCN0000155214 GAAGAACGCTACATTCCAGAT pLKO.1 1110 CDS 100% 4.050 2.835 N MDGA1 n/a
5 TRCN0000158042 CCGCTATAATGGCTTCAACGT pLKO.1 1674 CDS 100% 2.640 1.848 N MDGA1 n/a
6 TRCN0000156329 CGAACCTTTCAGACAACACCT pLKO.1 2360 CDS 100% 2.640 1.848 N MDGA1 n/a
7 TRCN0000157231 GCTGTCCAAGAACTACTCCTA pLKO.1 2076 CDS 100% 2.640 1.848 N MDGA1 n/a
8 TRCN0000173087 CAGATGAGGAAACTGAGGCTT pLKO.1 3376 3UTR 100% 2.640 1.320 Y FLJ45966 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006715056.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.