Transcript: Human XM_006716151.4

PREDICTED: Homo sapiens zinc finger protein 282 (ZNF282), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF282 (8427)
Length:
3710
CDS:
96..2114

Additional Resources:

NCBI RefSeq record:
XM_006716151.4
NBCI Gene record:
ZNF282 (8427)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006716151.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000107333 GCCATCCCTACGGAATCCATT pLKO.1 1023 CDS 100% 4.950 6.930 N ZNF282 n/a
2 TRCN0000413747 ATATTCCCACGGATCCCAATT pLKO_005 1141 CDS 100% 10.800 7.560 N ZNF282 n/a
3 TRCN0000417183 ATGGACGGAGAGCTTGGATTA pLKO_005 1245 CDS 100% 10.800 7.560 N ZNF282 n/a
4 TRCN0000426255 CAGATCTGTCTGGTCTGAATG pLKO_005 2267 3UTR 100% 10.800 7.560 N ZNF282 n/a
5 TRCN0000445123 GTGTGGGATCAGCAGGATTTG pLKO_005 1110 CDS 100% 10.800 7.560 N ZNF282 n/a
6 TRCN0000425298 ACGAATGGCAGAAGGAGCTTT pLKO_005 742 CDS 100% 4.950 3.465 N ZNF282 n/a
7 TRCN0000107332 CGAAGACGAGTGGAAGAACTT pLKO.1 719 CDS 100% 4.950 3.465 N ZNF282 n/a
8 TRCN0000107330 CCATGATGATTTGTTCCAGTT pLKO.1 3065 3UTR 100% 4.050 2.835 N ZNF282 n/a
9 TRCN0000107331 CGGATTAAACAGGAGGAGCAT pLKO.1 1083 CDS 100% 2.640 1.848 N ZNF282 n/a
10 TRCN0000107334 GAGAGAGAAATCCCAATGGAT pLKO.1 897 CDS 100% 3.000 1.800 N ZNF282 n/a
11 TRCN0000095680 GCTCAAGAATGGGACATGGAT pLKO.1 261 CDS 100% 3.000 2.100 N Zfp282 n/a
12 TRCN0000107779 GCGCATCCACACGGGCGAGAA pLKO.1 1961 CDS 100% 0.000 0.000 Y ZNF787 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006716151.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.