Transcript: Human XM_006716183.3

PREDICTED: Homo sapiens GTF2I repeat domain containing 1 (GTF2IRD1), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
GTF2IRD1 (9569)
Length:
4690
CDS:
35..2917

Additional Resources:

NCBI RefSeq record:
XM_006716183.3
NBCI Gene record:
GTF2IRD1 (9569)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006716183.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000013475 CCAATGTACATGGTGGACTAT pLKO.1 3991 3UTR 100% 4.950 6.930 N GTF2IRD1 n/a
2 TRCN0000017170 GCCGTACTCCAAGTTTCTGAT pLKO.1 1801 CDS 100% 4.950 6.930 N LOC402280 n/a
3 TRCN0000229694 CCGGTGCTGGTCCCTTATAAA pLKO_005 2456 CDS 100% 15.000 10.500 N GTF2IRD1 n/a
4 TRCN0000218098 AGGAACTCTTCAACGAGAAAT pLKO_005 2409 CDS 100% 13.200 9.240 N GTF2IRD1 n/a
5 TRCN0000218816 GGAGGTGTTTGATGTTCTTTA pLKO_005 433 CDS 100% 13.200 9.240 N GTF2IRD1 n/a
6 TRCN0000229693 GGATGTTTGATGAGCGAATTT pLKO_005 1308 CDS 100% 13.200 9.240 N GTF2IRD1 n/a
7 TRCN0000081794 CGTCCATGACAAGTCAGAGAA pLKO.1 1024 CDS 100% 4.950 3.465 N Gtf2ird1 n/a
8 TRCN0000013474 GCGCCATAGTATCCACTTCAT pLKO.1 1279 CDS 100% 4.950 3.465 N GTF2IRD1 n/a
9 TRCN0000013476 CCACTTCATCATTAAGAGGAT pLKO.1 1291 CDS 100% 2.640 1.848 N GTF2IRD1 n/a
10 TRCN0000013473 GTACTGAATCAGGACCTCACT pLKO.1 4060 3UTR 100% 2.640 1.584 N GTF2IRD1 n/a
11 TRCN0000229695 GTACTGAATCAGGACCTCACT pLKO_005 4060 3UTR 100% 2.640 1.584 N GTF2IRD1 n/a
12 TRCN0000013477 CCCTTTGCAGAAATCTGCAAT pLKO.1 2627 CDS 100% 0.495 0.297 N GTF2IRD1 n/a
13 TRCN0000017169 CCAGAGGATCTGGACATCATT pLKO.1 1526 CDS 100% 5.625 2.813 Y LOC402280 n/a
14 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 3130 3UTR 100% 4.950 2.475 Y ERAP2 n/a
15 TRCN0000138391 CGCCTGTAATCCTAGCACTTT pLKO.1 3598 3UTR 100% 4.950 2.475 Y DENND6A n/a
16 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 3131 3UTR 100% 13.200 6.600 Y LIAS n/a
17 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 4658 3UTR 100% 4.950 2.475 Y CFLAR n/a
18 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 4658 3UTR 100% 4.950 2.475 Y C19orf31 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006716183.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.