Transcript: Human XM_006722215.3

PREDICTED: Homo sapiens helicase with zinc finger (HELZ), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
HELZ (9931)
Length:
13828
CDS:
813..6020

Additional Resources:

NCBI RefSeq record:
XM_006722215.3
NBCI Gene record:
HELZ (9931)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006722215.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000162533 CACGGTTACATGACCTTCTTT pLKO.1 1480 CDS 100% 5.625 7.875 N HELZ n/a
2 TRCN0000161931 GCTGCTAGACTTGCAACTAAT pLKO.1 6155 3UTR 100% 13.200 10.560 N HELZ n/a
3 TRCN0000160132 CCAAAGTCAATGCTGTTTATT pLKO.1 1774 CDS 100% 15.000 10.500 N HELZ n/a
4 TRCN0000160982 GATGCACAGTTCCCTTTGTTT pLKO.1 6102 3UTR 100% 5.625 3.938 N HELZ n/a
5 TRCN0000162269 CCTGAGAAAGTGCTTAGTGAA pLKO.1 852 CDS 100% 4.950 3.465 N HELZ n/a
6 TRCN0000158502 CCCAGAAAGAAGATATTCTTA pLKO.1 2461 CDS 100% 0.563 0.338 N HELZ n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006722215.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.