Transcript: Mouse XM_011239457.1

PREDICTED: Mus musculus Rho GTPase activating protein 1 (Arhgap1), transcript variant X6, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Arhgap1 (228359)
Length:
2926
CDS:
182..1501

Additional Resources:

NCBI RefSeq record:
XM_011239457.1
NBCI Gene record:
Arhgap1 (228359)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011239457.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000097234 CCCTGCTAATAGGGATGATAA pLKO.1 1926 3UTR 100% 13.200 18.480 N Arhgap1 n/a
2 TRCN0000305834 ATTGTGGAAGTAGCCGGTGAT pLKO_005 395 CDS 100% 4.050 3.240 N Arhgap1 n/a
3 TRCN0000305835 GCTTGGTTCTTCTAGGATTTA pLKO_005 1749 3UTR 100% 13.200 9.240 N Arhgap1 n/a
4 TRCN0000097238 CAAGATGACCAACACTAACTT pLKO.1 1336 CDS 100% 5.625 3.938 N Arhgap1 n/a
5 TRCN0000324650 CAAGATGACCAACACTAACTT pLKO_005 1336 CDS 100% 5.625 3.938 N Arhgap1 n/a
6 TRCN0000097236 CCTCGCCAAGTGCTCAAGTAT pLKO.1 800 CDS 100% 5.625 3.938 N Arhgap1 n/a
7 TRCN0000047299 CCCAAGTCAGATGACTCCAAA pLKO.1 305 CDS 100% 4.950 3.465 N ARHGAP1 n/a
8 TRCN0000291746 CCCAAGTCAGATGACTCCAAA pLKO_005 305 CDS 100% 4.950 3.465 N ARHGAP1 n/a
9 TRCN0000097235 CCTGAACCCTTGCTAACCTTT pLKO.1 1157 CDS 100% 4.950 3.465 N Arhgap1 n/a
10 TRCN0000324714 CCTGAACCCTTGCTAACCTTT pLKO_005 1157 CDS 100% 4.950 3.465 N Arhgap1 n/a
11 TRCN0000097237 CCTCAAGGCTATCAATCCCAT pLKO.1 1408 CDS 100% 2.640 1.848 N Arhgap1 n/a
12 TRCN0000324652 CCTCAAGGCTATCAATCCCAT pLKO_005 1408 CDS 100% 2.640 1.848 N Arhgap1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011239457.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.