Transcript: Mouse XM_011239858.3

PREDICTED: Mus musculus solute carrier family 4, sodium bicarbonate cotransporter-like, member 10 (Slc4a10), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Mus musculus (mouse)
Gene:
Slc4a10 (94229)
Length:
5252
CDS:
339..3743

Additional Resources:

NCBI RefSeq record:
XM_011239858.3
NBCI Gene record:
Slc4a10 (94229)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011239858.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000351076 AGCAACTGAAGGTCGTATAAG pLKO_005 1931 CDS 100% 13.200 18.480 N Slc4a10 n/a
2 TRCN0000339143 CAGATCGATTGCGACCTTAAT pLKO_005 1496 CDS 100% 13.200 18.480 N Slc4a10 n/a
3 TRCN0000351075 CGACCCGTCTGTGATCAATAT pLKO_005 3563 CDS 100% 13.200 10.560 N Slc4a10 n/a
4 TRCN0000339144 TAGAAGGTCATCGGACATTAT pLKO_005 460 CDS 100% 13.200 10.560 N Slc4a10 n/a
5 TRCN0000079224 CGGACATTATTTATTGGAGTT pLKO.1 471 CDS 100% 4.050 3.240 N Slc4a10 n/a
6 TRCN0000339142 TAACCTGAAGATGCCTGATAA pLKO_005 4070 3UTR 100% 13.200 9.240 N Slc4a10 n/a
7 TRCN0000079226 CCAGTGTTATACGGAGTGTTT pLKO.1 3138 CDS 100% 4.950 3.465 N Slc4a10 n/a
8 TRCN0000079227 GCCAGTGTTATACGGAGTGTT pLKO.1 3137 CDS 100% 4.950 3.465 N Slc4a10 n/a
9 TRCN0000079225 GCTCAGTGAAACCTATCCAAT pLKO.1 2270 CDS 100% 4.950 3.465 N Slc4a10 n/a
10 TRCN0000079223 GCTGCTAAGTTTGGTTCCTAT pLKO.1 4588 3UTR 100% 4.950 3.465 N Slc4a10 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011239858.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.