Transcript: Mouse XM_011240057.2

PREDICTED: Mus musculus microsomal glutathione S-transferase 2 (Mgst2), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Mgst2 (211666)
Length:
853
CDS:
516..764

Additional Resources:

NCBI RefSeq record:
XM_011240057.2
NBCI Gene record:
Mgst2 (211666)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011240057.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000103306 GCTGGGTGGTACTTCAATCAA pLKO.1 528 CDS 100% 5.625 7.875 N Mgst2 n/a
2 TRCN0000288407 GCTGGGTGGTACTTCAATCAA pLKO_005 528 CDS 100% 5.625 7.875 N Mgst2 n/a
3 TRCN0000103309 GTACATATACGCCCGTCACAA pLKO.1 575 CDS 100% 4.950 6.930 N Mgst2 n/a
4 TRCN0000288332 GTACATATACGCCCGTCACAA pLKO_005 575 CDS 100% 4.950 6.930 N Mgst2 n/a
5 TRCN0000295671 GGTCGGACGAGCAAGACTAAA pLKO_005 395 5UTR 100% 13.200 9.240 N Mgst2 n/a
6 TRCN0000295672 TTATCCTGTATTCATCGTAAT pLKO_005 497 5UTR 100% 10.800 7.560 N Mgst2 n/a
7 TRCN0000103308 CGAGAGAATATTTCGTGCACA pLKO.1 458 5UTR 100% 2.640 1.848 N Mgst2 n/a
8 TRCN0000103305 CCTGAACGAATACCTGGACTT pLKO.1 710 CDS 100% 4.050 2.430 N Mgst2 n/a
9 TRCN0000288341 CCTGAACGAATACCTGGACTT pLKO_005 710 CDS 100% 4.050 2.430 N Mgst2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011240057.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.