Transcript: Mouse XM_011240122.2

PREDICTED: Mus musculus leucine rich repeat containing 7 (Lrrc7), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Lrrc7 (242274)
Length:
20408
CDS:
816..5429

Additional Resources:

NCBI RefSeq record:
XM_011240122.2
NBCI Gene record:
Lrrc7 (242274)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011240122.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000252707 CAGGATAGAAACGGTTGATAT pLKO_005 1535 CDS 100% 13.200 18.480 N Lrrc7 n/a
2 TRCN0000252708 CCTCCGGACACCATTACTAAA pLKO_005 4908 CDS 100% 13.200 18.480 N Lrrc7 n/a
3 TRCN0000252705 AGACTTGACCTAGGCAATAAT pLKO_005 1377 CDS 100% 15.000 10.500 N Lrrc7 n/a
4 TRCN0000252706 ACTCCTTACCCGGAGGATTTA pLKO_005 2523 CDS 100% 13.200 9.240 N Lrrc7 n/a
5 TRCN0000147187 CCTGAAGTTCTGGATCAAATA pLKO.1 1413 CDS 100% 13.200 9.240 N LRRC7 n/a
6 TRCN0000015481 GAGGCAAAGAGAGAGGACAAA pLKO.1 8343 3UTR 100% 4.950 3.465 N TCERG1L n/a
7 TRCN0000088533 CGGGAGGCAGAGGCAGGCAAT pLKO.1 9848 3UTR 100% 0.000 0.000 Y Trrap n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011240122.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.