Transcript: Mouse XM_011240469.2

PREDICTED: Mus musculus origin recognition complex, subunit 1 (Orc1), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Orc1 (18392)
Length:
4082
CDS:
101..2527

Additional Resources:

NCBI RefSeq record:
XM_011240469.2
NBCI Gene record:
Orc1 (18392)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011240469.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000071185 GCCTAATAAACCTCGTGAAAT pLKO.1 844 CDS 100% 13.200 18.480 N Orc1 n/a
2 TRCN0000336406 TACGGTAACATACTATGTATA pLKO_005 2677 3UTR 100% 13.200 18.480 N Orc1 n/a
3 TRCN0000374757 CCTAACACGAGGTGGTCAAAG pLKO_005 740 CDS 100% 10.800 15.120 N Orc1 n/a
4 TRCN0000071184 GCCCACTTAATGGAAGCTATA pLKO.1 2186 CDS 100% 10.800 8.640 N Orc1 n/a
5 TRCN0000353389 TCTTGACTTTGAAGCGGATTA pLKO_005 1137 CDS 100% 10.800 8.640 N Orc1 n/a
6 TRCN0000374770 GCTTTGTCTCAGAGCTTTATT pLKO_005 2546 3UTR 100% 15.000 10.500 N Orc1 n/a
7 TRCN0000336404 ACCAGACTCCTGCTAATATTG pLKO_005 663 CDS 100% 13.200 9.240 N Orc1 n/a
8 TRCN0000336339 TTCAATATGTTGAGGTTAATG pLKO_005 1629 CDS 100% 13.200 9.240 N Orc1 n/a
9 TRCN0000071186 GCACAGGAGATATTCTGGTAT pLKO.1 326 CDS 100% 4.950 3.465 N Orc1 n/a
10 TRCN0000071183 GCAGAATATACAGGATGGAAA pLKO.1 2593 3UTR 100% 4.950 3.465 N Orc1 n/a
11 TRCN0000071187 CTGAGGAATTTAAGGGCCTTT pLKO.1 2021 CDS 100% 4.050 2.835 N Orc1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011240469.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.