Transcript: Mouse XM_011241902.2

PREDICTED: Mus musculus DNA segment, Chr 7, ERATO Doi 443, expressed (D7Ertd443e), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
D7Ertd443e (71007)
Length:
2425
CDS:
59..2086

Additional Resources:

NCBI RefSeq record:
XM_011241902.2
NBCI Gene record:
D7Ertd443e (71007)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011241902.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000252140 CTGTAGTTCCCACCAGTTAAC pLKO_005 889 CDS 100% 10.800 15.120 N D7Ertd443e n/a
2 TRCN0000167754 GATAACTTGTTCAAACCCAAA pLKO.1 1883 CDS 100% 4.050 5.670 N C10orf90 n/a
3 TRCN0000252141 ACCAACTCTCCATCCATATTC pLKO_005 1200 CDS 100% 13.200 9.240 N D7Ertd443e n/a
4 TRCN0000252142 ATGGATGAACCATTACATTTA pLKO_005 2142 3UTR 100% 13.200 9.240 N D7Ertd443e n/a
5 TRCN0000252143 CCCAATGCCATTTACTATTTG pLKO_005 785 CDS 100% 13.200 9.240 N D7Ertd443e n/a
6 TRCN0000252144 TGAGCATGCACAGGCGATTTG pLKO_005 285 CDS 100% 10.800 7.560 N D7Ertd443e n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011241902.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.