Transcript: Mouse XM_011242569.2

PREDICTED: Mus musculus coiled-coil domain containing 84 (Ccdc84), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ccdc84 (382073)
Length:
1056
CDS:
94..921

Additional Resources:

NCBI RefSeq record:
XM_011242569.2
NBCI Gene record:
Ccdc84 (382073)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011242569.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000181697 CCAGGATTATGCACGGTTTAA pLKO.1 462 CDS 100% 13.200 18.480 N Ccdc84 n/a
2 TRCN0000246383 CACCCGGAATTGGTAACATTC pLKO_005 803 CDS 100% 10.800 15.120 N Ccdc84 n/a
3 TRCN0000182862 CCCAGGATTATGCACGGTTTA pLKO.1 461 CDS 100% 10.800 15.120 N Ccdc84 n/a
4 TRCN0000246384 AGGAGGACGAGGTGATTAAAG pLKO_005 521 CDS 100% 13.200 9.240 N Ccdc84 n/a
5 TRCN0000246385 CAGGATTATGCACGGTTTAAG pLKO_005 463 CDS 100% 13.200 9.240 N Ccdc84 n/a
6 TRCN0000246386 ACAGGACAGCAACTAACATTC pLKO_005 766 CDS 100% 10.800 7.560 N Ccdc84 n/a
7 TRCN0000181786 GCCCAGATGAAAGAGAAGTTT pLKO.1 430 CDS 100% 5.625 3.938 N Ccdc84 n/a
8 TRCN0000182073 CAAATTCTGGTGGGAGAACAA pLKO.1 402 CDS 100% 4.950 3.465 N Ccdc84 n/a
9 TRCN0000198563 GCTTGGATTCCTATGAGGAAA pLKO.1 500 CDS 100% 4.950 3.465 N Ccdc84 n/a
10 TRCN0000142088 CAACAAATTCTGGTGGGAGAA pLKO.1 399 CDS 100% 4.050 2.835 N CCDC84 n/a
11 TRCN0000140926 CCAACAAATTCTGGTGGGAGA pLKO.1 398 CDS 100% 2.160 1.512 N CCDC84 n/a
12 TRCN0000181525 GAGGTGATTAAAGAGATGGCA pLKO.1 529 CDS 100% 0.750 0.525 N Ccdc84 n/a
13 TRCN0000421061 AGATGAAAGAGAAGTTTCTGG pLKO_005 434 CDS 100% 2.640 1.848 N CCDC84 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011242569.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.