Transcript: Mouse XM_011243441.2

PREDICTED: Mus musculus IKAROS family zinc finger 4 (Ikzf4), transcript variant X6, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ikzf4 (22781)
Length:
5706
CDS:
878..2497

Additional Resources:

NCBI RefSeq record:
XM_011243441.2
NBCI Gene record:
Ikzf4 (22781)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011243441.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000096459 CCCTGACCGATTTGAGCATTT pLKO.1 2667 3UTR 100% 10.800 15.120 N Ikzf4 n/a
2 TRCN0000096460 GCCAACTTTCATTGATCGTTT pLKO.1 1663 CDS 100% 4.950 6.930 N Ikzf4 n/a
3 TRCN0000096463 GATAAGGATGACAGTGTGATT pLKO.1 1097 CDS 100% 4.950 3.465 N Ikzf4 n/a
4 TRCN0000096461 CCACAGAAGTTTGTAGGTGAA pLKO.1 1718 CDS 100% 4.050 2.835 N Ikzf4 n/a
5 TRCN0000096462 CGGCCAACTTTCATTGATCGT pLKO.1 1661 CDS 100% 2.640 1.848 N Ikzf4 n/a
6 TRCN0000274797 CCTTAGCTCTGTGGCATTATA pLKO_005 3035 3UTR 100% 15.000 10.500 N IKZF4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011243441.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.