Transcript: Mouse XM_011243450.2

PREDICTED: Mus musculus transmembrane and tetratricopeptide repeat containing 3 (Tmtc3), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Tmtc3 (237500)
Length:
6042
CDS:
253..3015

Additional Resources:

NCBI RefSeq record:
XM_011243450.2
NBCI Gene record:
Tmtc3 (237500)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011243450.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000177816 CCCGATTGTATTAACCGTGTT pLKO.1 783 CDS 100% 4.050 2.835 N Tmtc3 n/a
2 TRCN0000133967 CTGGACAGAAATAATGCAGAT pLKO.1 2041 CDS 100% 4.050 2.835 N TMTC3 n/a
3 TRCN0000178062 GCGCTTTGTTTAATGGCGTTA pLKO.1 1318 CDS 100% 4.050 2.835 N Tmtc3 n/a
4 TRCN0000177271 GCACTGTTCAATTCTGCTATT pLKO.1 2164 CDS 100% 10.800 6.480 N Tmtc3 n/a
5 TRCN0000166364 CACACACACACACACACACAA pLKO.1 5205 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011243450.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05107 pDONR223 100% 85% 89.7% None (many diffs) n/a
2 ccsbBroad304_05107 pLX_304 0% 85% 89.7% V5 (many diffs) n/a
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