Transcript: Mouse XM_011244561.2

PREDICTED: Mus musculus spermatogenesis associated 31 subfamily D, member 1A (Spata31d1a), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Spata31d1a (72219)
Length:
4601
CDS:
1461..4388

Additional Resources:

NCBI RefSeq record:
XM_011244561.2
NBCI Gene record:
Spata31d1a (72219)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011244561.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000217330 GTTGTCGCGTATGTAACAAAG pLKO.1 724 5UTR 100% 10.800 15.120 N Spata31d1a n/a
2 TRCN0000216033 CAAATTCGACACATGTTATTA pLKO.1 1246 5UTR 100% 15.000 10.500 N Spata31d1a n/a
3 TRCN0000264626 AGACACCGTCCAGGGATAAAC pLKO_005 2442 CDS 100% 13.200 9.240 N Spata31d1a n/a
4 TRCN0000264623 GGGTCTCTCTCTATAAGTTTA pLKO_005 2317 CDS 100% 13.200 9.240 N Spata31d1a n/a
5 TRCN0000189621 CCAGAACTTCAGCTAGGGAAT pLKO.1 2535 CDS 100% 4.050 2.835 N Spata31d1a n/a
6 TRCN0000264622 AGACATGAAGCTAGCTAGGAG pLKO_005 4439 3UTR 100% 2.640 1.848 N Spata31d1a n/a
7 TRCN0000264624 AGGGAGAAAGCAGTATCTTAT pLKO_005 1437 5UTR 100% 13.200 7.920 N Spata31d1a n/a
8 TRCN0000264625 TACCCAGGAAGGGACTATTTC pLKO_005 1701 CDS 100% 0.000 0.000 N Spata31d1a n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011244561.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.