Transcript: Mouse XM_011245146.2

PREDICTED: Mus musculus DAZ interacting protein 1 (Dzip1), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Dzip1 (66573)
Length:
4114
CDS:
626..3184

Additional Resources:

NCBI RefSeq record:
XM_011245146.2
NBCI Gene record:
Dzip1 (66573)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011245146.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000445489 GAATTTGCCAGTAAACCATAC pLKO_005 1898 CDS 100% 6.000 8.400 N Dzip1 n/a
2 TRCN0000444883 AGCAGAACGAGCTGATTATCA pLKO_005 1857 CDS 100% 5.625 7.875 N Dzip1 n/a
3 TRCN0000127254 GCCGTTACTAACGAGTTCTTT pLKO.1 3690 3UTR 100% 5.625 7.875 N Dzip1 n/a
4 TRCN0000453219 CCACATAGAGAAGCTTCGAAG pLKO_005 1759 CDS 100% 4.050 5.670 N Dzip1 n/a
5 TRCN0000127257 GAAGGATTTAAGTGCAGATAA pLKO.1 1789 CDS 100% 13.200 9.240 N Dzip1 n/a
6 TRCN0000440091 AGCAAGTGGACAGATCGATTT pLKO_005 1691 CDS 100% 10.800 7.560 N Dzip1 n/a
7 TRCN0000127258 TGGAACCAATAGAAGAACTTT pLKO.1 2079 CDS 100% 5.625 3.938 N Dzip1 n/a
8 TRCN0000127256 CCGACAAACACTGGAACCTAA pLKO.1 1954 CDS 100% 4.950 3.465 N Dzip1 n/a
9 TRCN0000127255 CCAGCTATTACCAGTGCCATT pLKO.1 1164 CDS 100% 4.050 2.430 N Dzip1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011245146.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.