Transcript: Mouse XM_011246223.2

PREDICTED: Mus musculus RIKEN cDNA 9030025P20 gene (9030025P20Rik), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
9030025P20Rik (100041574)
Length:
1620
CDS:
580..1518

Additional Resources:

NCBI RefSeq record:
XM_011246223.2
NBCI Gene record:
9030025P20Rik (100041574)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011246223.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000270018 CCGAGTCAACAATTCTATATA pLKO_005 1157 CDS 100% 15.000 9.000 N 9030025P20Rik n/a
2 TRCN0000269949 CCTCGTATCCGGGATCATTTA pLKO_005 1297 CDS 100% 13.200 6.600 Y 9030025P20Rik n/a
3 TRCN0000270016 CTTTAGTGCATGACTTGATTT pLKO_005 132 5UTR 100% 13.200 6.600 Y 9030025P20Rik n/a
4 TRCN0000269953 TCCTCGTATCCGGGATCATTT pLKO_005 1296 CDS 100% 13.200 6.600 Y Gm3435 n/a
5 TRCN0000270022 TGCTGTGATGGACATACTAAA pLKO_005 702 CDS 100% 13.200 6.600 Y Gm3435 n/a
6 TRCN0000270019 TATGAGGTACTGTCAGCATTA pLKO_005 952 CDS 100% 10.800 5.400 Y Gm3435 n/a
7 TRCN0000269950 TGATATCAATAGCATTGTAAC pLKO_005 184 5UTR 100% 10.800 5.400 Y 9030025P20Rik n/a
8 TRCN0000197451 CCTTTAGTGCATGACTTGATT pLKO.1 131 5UTR 100% 5.625 2.813 Y Ermard n/a
9 TRCN0000177327 GCTCAGTTTGAAATTCAGTAT pLKO.1 350 5UTR 100% 4.950 2.475 Y Ermard n/a
10 TRCN0000176654 CGTTTGATGAAATACTGGCAA pLKO.1 1181 CDS 100% 2.640 1.320 Y Ermard n/a
11 TRCN0000176496 CTTGATTTGTAACCTTGGGTT pLKO.1 145 5UTR 100% 2.640 1.320 Y Ermard n/a
12 TRCN0000200453 GCAATTACTGACCGTGTGAGA pLKO.1 230 5UTR 100% 2.640 1.320 Y Ermard n/a
13 TRCN0000177144 GATATGAAGAATTAGGGCGAA pLKO.1 249 5UTR 100% 2.160 1.080 Y Ermard n/a
14 TRCN0000178106 GTGGACAACTTATCCAGAGTT pLKO.1 385 5UTR 100% 4.950 2.475 Y Ermard n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011246223.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.