Transcript: Mouse XM_011247398.2

PREDICTED: Mus musculus 5'-nucleotidase, cytosolic II (Nt5c2), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Nt5c2 (76952)
Length:
5429
CDS:
712..2001

Additional Resources:

NCBI RefSeq record:
XM_011247398.2
NBCI Gene record:
Nt5c2 (76952)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011247398.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000081444 CGGATTAAGAAAGTAACTCAT pLKO.1 1582 CDS 100% 4.950 6.930 N Nt5c2 n/a
2 TRCN0000327330 CGGATTAAGAAAGTAACTCAT pLKO_005 1582 CDS 100% 4.950 6.930 N Nt5c2 n/a
3 TRCN0000081445 CGCACGTCAGTGGATTTCAAA pLKO.1 1843 CDS 100% 5.625 4.500 N Nt5c2 n/a
4 TRCN0000327333 CGCACGTCAGTGGATTTCAAA pLKO_005 1843 CDS 100% 5.625 4.500 N Nt5c2 n/a
5 TRCN0000081447 GCAGTCCTACTTTGACCTGAT pLKO.1 1155 CDS 100% 4.050 3.240 N Nt5c2 n/a
6 TRCN0000081446 CAGTCCTACTTTGACCTGATT pLKO.1 1156 CDS 100% 4.950 3.465 N Nt5c2 n/a
7 TRCN0000327331 CAGTCCTACTTTGACCTGATT pLKO_005 1156 CDS 100% 4.950 3.465 N Nt5c2 n/a
8 TRCN0000306659 GCTACTAACAGTGACTATAAG pLKO_005 1060 CDS 100% 13.200 7.920 N Nt5c2 n/a
9 TRCN0000081443 CCTGGAAAGTTTGGAAAGTTT pLKO.1 2109 3UTR 100% 5.625 3.375 N Nt5c2 n/a
10 TRCN0000327332 CCTGGAAAGTTTGGAAAGTTT pLKO_005 2109 3UTR 100% 5.625 3.375 N Nt5c2 n/a
11 TRCN0000050949 CCTGCTAACATGGATAAGCAT pLKO.1 138 5UTR 100% 3.000 1.800 N NT5C2 n/a
12 TRCN0000179671 GATGATGATGAAGAGGAAGAA pLKO.1 1969 CDS 100% 4.950 2.475 Y Ldoc1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011247398.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.