Transcript: Mouse XM_011247566.2

PREDICTED: Mus musculus alpha thalassemia/mental retardation syndrome X-linked (Atrx), transcript variant X8, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Atrx (22589)
Length:
10683
CDS:
801..8123

Additional Resources:

NCBI RefSeq record:
XM_011247566.2
NBCI Gene record:
Atrx (22589)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011247566.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000081909 CCCACGGATGAGAATGTAAAT pLKO.1 972 CDS 100% 13.200 18.480 N Atrx n/a
2 TRCN0000302074 CCCACGGATGAGAATGTAAAT pLKO_005 972 CDS 100% 13.200 18.480 N Atrx n/a
3 TRCN0000013588 GCCTGCTAAATTCTCCACATT pLKO.1 10301 3UTR 100% 4.950 3.960 N ATRX n/a
4 TRCN0000081911 CCACTAACACTCCTGAGGATT pLKO.1 2176 CDS 100% 4.950 3.465 N Atrx n/a
5 TRCN0000302007 CCACTAACACTCCTGAGGATT pLKO_005 2176 CDS 100% 4.950 3.465 N Atrx n/a
6 TRCN0000081910 CCTGTCACTTTCACCTCTCAA pLKO.1 7536 CDS 100% 4.950 3.465 N Atrx n/a
7 TRCN0000302071 CCTGTCACTTTCACCTCTCAA pLKO_005 7536 CDS 100% 4.950 3.465 N Atrx n/a
8 TRCN0000081908 CCTTCTAACTACCAGCAGATT pLKO.1 7983 CDS 100% 4.950 3.465 N Atrx n/a
9 TRCN0000302006 CCTTCTAACTACCAGCAGATT pLKO_005 7983 CDS 100% 4.950 3.465 N Atrx n/a
10 TRCN0000013589 GCAGATTGATATGAGAGGAAT pLKO.1 7997 CDS 100% 4.950 3.465 N ATRX n/a
11 TRCN0000081912 GCTATGAAGTTATGTCAACTT pLKO.1 1842 CDS 100% 0.495 0.347 N Atrx n/a
12 TRCN0000302073 GCTATGAAGTTATGTCAACTT pLKO_005 1842 CDS 100% 0.495 0.347 N Atrx n/a
13 TRCN0000342876 GAGTTGATTCCTCAAGTTATG pLKO_005 8527 3UTR 100% 10.800 7.560 N ATRX n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011247566.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.