Transcript: Mouse XM_011247918.2

PREDICTED: Mus musculus DEAH (Asp-Glu-Ala-His) box polypeptide 9 (Dhx9), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Dhx9 (13211)
Length:
4647
CDS:
180..4334

Additional Resources:

NCBI RefSeq record:
XM_011247918.2
NBCI Gene record:
Dhx9 (13211)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011247918.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000349797 ACGCCCTCATGCCAGTATAAT pLKO_005 1628 CDS 100% 15.000 21.000 N Dhx9 n/a
2 TRCN0000071116 CGCAAAGTGTTTGATCCAGTA pLKO.1 2274 CDS 100% 4.050 5.670 N Dhx9 n/a
3 TRCN0000071115 GCCTATGAAATTAGAGCAGTA pLKO.1 237 CDS 100% 4.050 3.240 N Dhx9 n/a
4 TRCN0000349840 ATGGAGTAACCAAGGTTATTT pLKO_005 2299 CDS 100% 15.000 10.500 N Dhx9 n/a
5 TRCN0000349799 GACCGAGGAGCCAACCTTAAA pLKO_005 606 CDS 100% 13.200 9.240 N Dhx9 n/a
6 TRCN0000349798 TAAACCCATTTCCCACTTAAT pLKO_005 4419 3UTR 100% 13.200 9.240 N Dhx9 n/a
7 TRCN0000071114 GCGCTTCTTAAATACATTGAA pLKO.1 2103 CDS 100% 5.625 3.938 N Dhx9 n/a
8 TRCN0000312003 GCGCTTCTTAAATACATTGAA pLKO_005 2103 CDS 100% 5.625 3.938 N Dhx9 n/a
9 TRCN0000071113 GCTGGTATCAACCTTATGATT pLKO.1 3618 CDS 100% 5.625 3.938 N Dhx9 n/a
10 TRCN0000071117 CCTCCACAATCCAACTGGAAT pLKO.1 1188 CDS 100% 4.950 3.465 N Dhx9 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011247918.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.