Transcript: Mouse XM_011247964.1

PREDICTED: Mus musculus thrombospondin, type I, domain containing 7B (Thsd7b), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Thsd7b (210417)
Length:
6100
CDS:
173..5002

Additional Resources:

NCBI RefSeq record:
XM_011247964.1
NBCI Gene record:
Thsd7b (210417)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011247964.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000245696 ATGAGCCGGACTCGATTTATC pLKO_005 3986 CDS 100% 13.200 18.480 N THSD7B n/a
2 TRCN0000092520 CCGGACTCGATTTATCATTAT pLKO.1 3991 CDS 100% 13.200 18.480 N Thsd7b n/a
3 TRCN0000423623 GCCGGAACGTGAAGCATATTG pLKO_005 1266 CDS 100% 13.200 18.480 N Thsd7b n/a
4 TRCN0000092521 GCATAGTATCTTCCTGGTCAA pLKO.1 1626 CDS 100% 4.050 3.240 N Thsd7b n/a
5 TRCN0000434606 ATGTCCCTGTGATACGTTTAT pLKO_005 2932 CDS 100% 13.200 9.240 N Thsd7b n/a
6 TRCN0000434456 CCTTGGGCAGAATACGAATAT pLKO_005 5107 3UTR 100% 13.200 9.240 N Thsd7b n/a
7 TRCN0000437605 CTTGATCCTCAGCCGCATATT pLKO_005 5319 3UTR 100% 13.200 9.240 N Thsd7b n/a
8 TRCN0000092519 CGGAAGAAATATCCAGGATTT pLKO.1 958 CDS 100% 10.800 7.560 N Thsd7b n/a
9 TRCN0000092518 GCAGAGTGTTAGCAAGGAAAT pLKO.1 5682 3UTR 100% 10.800 7.560 N Thsd7b n/a
10 TRCN0000092522 CCAGCCAGGAAATACTACAAT pLKO.1 2431 CDS 100% 5.625 3.938 N Thsd7b n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011247964.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.