Transcript: Mouse XM_011249547.2

PREDICTED: Mus musculus cytokine receptor-like factor 2 (Crlf2), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Crlf2 (57914)
Length:
1529
CDS:
286..1392

Additional Resources:

NCBI RefSeq record:
XM_011249547.2
NBCI Gene record:
Crlf2 (57914)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011249547.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000375037 GCCATGGTGTTTAAGGCTAGG pLKO_005 583 CDS 100% 2.250 1.800 N Crlf2 n/a
2 TRCN0000305736 AGGCTTCGCAGGGTGAAAGAT pLKO_005 1072 CDS 100% 5.625 3.938 N Crlf2 n/a
3 TRCN0000375035 TGTCACAGTCGTCTGCCATGA pLKO_005 363 CDS 100% 4.050 2.835 N Crlf2 n/a
4 TRCN0000375092 GGAGAGCAATGACGATGAGGA pLKO_005 735 CDS 100% 2.640 1.848 N Crlf2 n/a
5 TRCN0000375034 ACCTTGGAATGTGACGCTGCT pLKO_005 636 CDS 100% 2.160 1.512 N Crlf2 n/a
6 TRCN0000065916 CTTTGAGAAGCATCACGGGAA pLKO.1 1140 CDS 100% 2.160 1.512 N Crlf2 n/a
7 TRCN0000065915 CGCCAACTTGAGCCTGGAGTT pLKO.1 432 CDS 100% 1.350 0.945 N Crlf2 n/a
8 TRCN0000324338 CGCCAACTTGAGCCTGGAGTT pLKO_005 432 CDS 100% 1.350 0.945 N Crlf2 n/a
9 TRCN0000065914 CGCTGCTATGACTTCCGGGTT pLKO.1 817 CDS 100% 0.720 0.504 N Crlf2 n/a
10 TRCN0000065913 CTTGAAGTCACTGCCAGTCTA pLKO.1 1394 3UTR 100% 4.950 2.970 N Crlf2 n/a
11 TRCN0000353858 CTTGAAGTCACTGCCAGTCTA pLKO_005 1394 3UTR 100% 4.950 2.970 N Crlf2 n/a
12 TRCN0000311412 GAGGAGGAAGATGACCTCATC pLKO_005 1213 CDS 100% 4.050 2.430 N Crlf2 n/a
13 TRCN0000065917 GCCTGGAGTTCCGTTATGGTA pLKO.1 443 CDS 100% 3.000 2.400 N Crlf2 n/a
14 TRCN0000324406 GCCTGGAGTTCCGTTATGGTA pLKO_005 443 CDS 100% 3.000 2.400 N Crlf2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011249547.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.