Transcript: Mouse XM_011249960.1

PREDICTED: Mus musculus protein tyrosine phosphatase, receptor type, D (Ptprd), transcript variant X35, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ptprd (19266)
Length:
9105
CDS:
847..5385

Additional Resources:

NCBI RefSeq record:
XM_011249960.1
NBCI Gene record:
Ptprd (19266)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011249960.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000352600 CCGGAATGGAGCTCGAATTTA pLKO_005 4571 CDS 100% 15.000 21.000 N Ptprd n/a
2 TRCN0000217913 GAATTTGCCACATGCTATATG pLKO.1 7433 3UTR 100% 13.200 18.480 N Ptprd n/a
3 TRCN0000342210 TAAGTCCCTACTCGGATTATG pLKO_005 2018 CDS 100% 13.200 18.480 N Ptprd n/a
4 TRCN0000355692 TAAGTCCCTACTCGGATTATG pLKO_005 2018 CDS 100% 13.200 18.480 N PTPRD n/a
5 TRCN0000216966 CATAACCAGTACGGTGCTATT pLKO.1 8267 3UTR 100% 10.800 15.120 N Ptprd n/a
6 TRCN0000081269 GAGAAGTTGAATTAAAGCCAT pLKO.1 3188 CDS 100% 2.640 3.696 N LOC433880 n/a
7 TRCN0000002852 CCCACCCACTAATCATGAAAT pLKO.1 1590 CDS 100% 13.200 10.560 N PTPRD n/a
8 TRCN0000178663 CGGGTTCTCTTATCAGCAATA pLKO.1 3832 CDS 100% 10.800 8.640 N Ptprd n/a
9 TRCN0000352599 CGGGTTCTCTTATCAGCAATA pLKO_005 3832 CDS 100% 10.800 8.640 N Ptprd n/a
10 TRCN0000200197 CCTCAGTATATCCTGAGGGAA pLKO.1 4984 CDS 100% 0.264 0.211 N Ptprd n/a
11 TRCN0000002851 GCCAATCTTCCATGTAATAAA pLKO.1 4636 CDS 100% 15.000 10.500 N PTPRD n/a
12 TRCN0000342159 ACCACTTAGTGGGACTATTAC pLKO_005 5494 3UTR 100% 13.200 9.240 N Ptprd n/a
13 TRCN0000216864 GTAACCACCAGTCTTACTTAT pLKO.1 7246 3UTR 100% 13.200 9.240 N Ptprd n/a
14 TRCN0000178212 GCCAGTTTCCTTGATGGATAT pLKO.1 4750 CDS 100% 10.800 7.560 N Ptprd n/a
15 TRCN0000081271 CAGAACCTGAATCTGAAACAA pLKO.1 2441 CDS 100% 5.625 3.938 N LOC433880 n/a
16 TRCN0000081270 TCTTGGAACTTGCAGATCATA pLKO.1 3662 CDS 100% 5.625 3.938 N LOC433880 n/a
17 TRCN0000177466 GAAGTCATATTCCTTTGTGTT pLKO.1 2871 CDS 100% 4.950 3.465 N Ptprd n/a
18 TRCN0000182394 GCGTTGGAAGAACTGGAGTTT pLKO.1 5186 CDS 100% 4.950 3.465 N Ptprd n/a
19 TRCN0000081272 CCACTAAACTTCAAAGCAGAA pLKO.1 2425 CDS 100% 4.050 2.835 N LOC433880 n/a
20 TRCN0000177643 CCAGAAGATGATATGCCGATA pLKO.1 1702 CDS 100% 4.050 2.835 N Ptprd n/a
21 TRCN0000342158 CCAGAAGATGATATGCCGATA pLKO_005 1702 CDS 100% 4.050 2.835 N Ptprd n/a
22 TRCN0000081268 GCCAACTACATAGATGGCTAT pLKO.1 3883 CDS 100% 4.050 2.430 N LOC433880 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011249960.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.

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