Transcript: Mouse XM_011250172.1

PREDICTED: Mus musculus phosphatase and actin regulator 4 (Phactr4), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Phactr4 (100169)
Length:
4351
CDS:
742..2004

Additional Resources:

NCBI RefSeq record:
XM_011250172.1
NBCI Gene record:
Phactr4 (100169)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011250172.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000177928 CCTTACTGTTAATGCCGGTTT pLKO.1 2825 3UTR 100% 4.050 5.670 N Phactr4 n/a
2 TRCN0000415052 TCACGATTGAGATGTTGAAAG pLKO_005 1298 CDS 100% 10.800 8.640 N Phactr4 n/a
3 TRCN0000177846 CAGGAAGATTCTGCGGTTTAA pLKO.1 1809 CDS 100% 13.200 9.240 N Phactr4 n/a
4 TRCN0000216930 CACTAGAAAGCTCAGTCAAAG pLKO.1 1764 CDS 100% 10.800 7.560 N Phactr4 n/a
5 TRCN0000438341 CAGATTCAGAGGGTCCCATTA pLKO_005 1433 CDS 100% 10.800 7.560 N Phactr4 n/a
6 TRCN0000217657 GCATTCCATCAACTTCGATAC pLKO.1 797 CDS 100% 6.000 4.200 N Phactr4 n/a
7 TRCN0000176643 CCTGATTTCAAAGTGAGCTTA pLKO.1 2697 3UTR 100% 4.950 3.465 N Phactr4 n/a
8 TRCN0000177018 GTTCACAACTAAGACAGCAAA pLKO.1 840 CDS 100% 4.950 2.970 N Phactr4 n/a
9 TRCN0000063714 GAAGAAGATGATGATGATGAT pLKO.1 1468 CDS 100% 4.950 2.475 Y SET n/a
10 TRCN0000288612 GAAGAAGATGATGATGATGAT pLKO_005 1468 CDS 100% 4.950 2.475 Y SET n/a
11 TRCN0000093079 GATGAAGAAGAAGATGATGAT pLKO.1 1462 CDS 100% 4.950 2.475 Y Gm5518 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011250172.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.