Transcript: Mouse XM_011251044.2

PREDICTED: Mus musculus predicted gene, 21454 (Gm21454), mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Gm21454 (100862075)
Length:
1295
CDS:
478..1176

Additional Resources:

NCBI RefSeq record:
XM_011251044.2
NBCI Gene record:
Gm21454 (100862075)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011251044.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000246753 AGAGCGGTACAACACAAATTT pLKO_005 781 CDS 100% 15.000 7.500 Y Ssty1 n/a
2 TRCN0000246754 CCAACACCCTGAGGAATATTG pLKO_005 518 CDS 100% 13.200 6.600 Y Ssty1 n/a
3 TRCN0000263182 CCAATCCTTCCGTGTACTTTA pLKO_005 1082 CDS 100% 13.200 6.600 Y Gm20831 n/a
4 TRCN0000282512 GAGCGGTACAACACAAATTTG pLKO_005 782 CDS 100% 13.200 6.600 Y Gm20831 n/a
5 TRCN0000179795 GCCAACAAACCCTTCTCTTTA pLKO.1 618 CDS 100% 13.200 6.600 Y Gm20738 n/a
6 TRCN0000282514 TTGCCTCCCATAGTAGTATTT pLKO_005 718 CDS 100% 13.200 6.600 Y Gm20831 n/a
7 TRCN0000246752 TTTGCCTCCCATAGTAGTATT pLKO_005 717 CDS 100% 13.200 6.600 Y Ssty1 n/a
8 TRCN0000263183 ATGGTGACATCCATATCTATG pLKO_005 1112 CDS 100% 10.800 5.400 Y Gm20831 n/a
9 TRCN0000246755 CATATCTATGTCTATACTATG pLKO_005 1123 CDS 100% 10.800 5.400 Y Ssty1 n/a
10 TRCN0000215771 CCGTGTACTTTATCAAGTTTC pLKO.1 1091 CDS 100% 10.800 5.400 Y Ssty1 n/a
11 TRCN0000246756 CCGTGTACTTTATCAAGTTTC pLKO_005 1091 CDS 100% 10.800 5.400 Y Ssty1 n/a
12 TRCN0000263181 CTAGATCAACTGCCAACAAAC pLKO_005 607 CDS 100% 10.800 5.400 Y Gm20831 n/a
13 TRCN0000200581 CCAATCATGAAGGATTTGTTT pLKO.1 856 CDS 100% 5.625 2.813 Y Ssty1 n/a
14 TRCN0000347929 CAGCTCCTGGATGACTACAAG pLKO_005 916 CDS 100% 4.950 2.475 Y Gm20865 n/a
15 TRCN0000191781 GTGCCAAAGATTCTTGAAGTT pLKO.1 1144 CDS 100% 4.950 2.475 Y Ssty1 n/a
16 TRCN0000202239 GAAGGAAGGTAATGAGCCTGT pLKO.1 564 CDS 100% 2.160 1.080 Y Gm20747 n/a
17 TRCN0000191653 GACATCCATATCTATGTCTAT pLKO.1 1117 CDS 100% 0.495 0.248 Y Ssty1 n/a
18 TRCN0000347896 CAACAAACCCTTCTCTTTATT pLKO_005 620 CDS 100% 15.000 7.500 Y Gm21394 n/a
19 TRCN0000347820 CCAACAAACCCTTCTCTTTAT pLKO_005 619 CDS 100% 13.200 6.600 Y Gm20823 n/a
20 TRCN0000179232 GTTCGGAAAGGTTGTTTACAA pLKO.1 1053 CDS 100% 5.625 2.813 Y Ssty2 n/a
21 TRCN0000202389 GTAATGAGCCTGTCACCCATT pLKO.1 572 CDS 100% 4.050 2.025 Y Gm20747 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011251044.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.