Transcript: Human XM_011510191.2

PREDICTED: Homo sapiens centrosomal protein 350 (CEP350), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CEP350 (9857)
Length:
13626
CDS:
343..9912

Additional Resources:

NCBI RefSeq record:
XM_011510191.2
NBCI Gene record:
CEP350 (9857)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011510191.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000330117 ACCTAGTGCCAGCCAATATAA pLKO_005 2778 CDS 100% 15.000 21.000 N CEP350 n/a
2 TRCN0000330115 GAACGATATCAGTGCTATAAT pLKO_005 8314 CDS 100% 15.000 21.000 N CEP350 n/a
3 TRCN0000146663 CCATCCAGTAATGGTTGTTAA pLKO.1 1272 CDS 100% 13.200 18.480 N CEP350 n/a
4 TRCN0000150047 CCTGGAATGTTATAGCTTCAA pLKO.1 11445 3UTR 100% 4.950 6.930 N CEP350 n/a
5 TRCN0000147877 GCCAGCCAATATAAGAGTAAA pLKO.1 2785 CDS 100% 13.200 10.560 N CEP350 n/a
6 TRCN0000330116 AGTCGAGAAGAACGGAATATA pLKO_005 850 CDS 100% 15.000 10.500 N CEP350 n/a
7 TRCN0000128158 CCTCCAACTATAACAGGATTT pLKO.1 4192 CDS 100% 10.800 7.560 N CEP350 n/a
8 TRCN0000330114 CCTCCAACTATAACAGGATTT pLKO_005 4192 CDS 100% 10.800 7.560 N CEP350 n/a
9 TRCN0000128781 CCTGCACTTGTCTTACTCATT pLKO.1 10661 3UTR 100% 4.950 3.465 N CEP350 n/a
10 TRCN0000149933 GCCTCCAACTATAACAGGATT pLKO.1 4191 CDS 100% 4.950 3.465 N CEP350 n/a
11 TRCN0000149439 GCTGTGTATCTCATGCAACTT pLKO.1 3038 CDS 100% 4.950 3.465 N CEP350 n/a
12 TRCN0000129082 GCCAAGTATTTCAGGTTGCTT pLKO.1 8985 CDS 100% 3.000 2.100 N CEP350 n/a
13 TRCN0000130933 CGAGTGGATCATATCCTGGTT pLKO.1 9730 CDS 100% 2.640 1.848 N CEP350 n/a
14 TRCN0000330041 CACTGGATTAATGGGTTATTT pLKO_005 10103 3UTR 100% 15.000 9.000 N CEP350 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011510191.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.